Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 2.9e-128 461.8 225 100.0
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 9.5e-103 377.1 223 81.2
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.2e-99 365.9 214 79.9
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 6.8e-93 344.4 214 76.2
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 7.5e-92 340.9 213 73.7
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.9e-90 336.3 213 73.2
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 3.2e-90 335.5 212 75.5
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 5.4e-90 334.7 214 72.4
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 4.6e-89 331.6 213 75.1
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 6.0e-89 331.3 214 72.9
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.3e-88 329.3 214 75.2
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 3.0e-88 328.9 214 73.4
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 3.9e-88 328.6 214 72.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.5e-87 326.6 213 72.8
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 4.3e-87 325.1 214 70.1
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 7.3e-87 324.3 214 70.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 2.8e-86 322.4 214 71.0
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 3.6e-86 322.0 214 70.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.1e-85 320.5 211 72.5
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.1e-85 320.5 211 72.5
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 3.1e-85 318.9 214 71.0
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 5.2e-85 318.2 214 71.0
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.5e-84 316.6 214 70.1
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 2.6e-84 315.8 214 72.0
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.6e-84 315.8 214 71.5
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 4.4e-84 315.1 214 71.0
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 4.4e-84 315.1 214 71.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.3e-83 313.5 211 69.7
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 3.7e-83 312.0 214 70.6
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.9e-83 311.6 214 71.0
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 8.3e-83 310.8 214 66.8
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.4e-82 310.1 214 67.8
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 4.1e-82 308.5 218 67.9
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 5.4e-82 308.1 214 68.7
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 5.4e-82 308.1 214 71.0
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 7.1e-82 307.8 270 58.5
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 9.2e-82 307.4 214 66.8
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 1.2e-81 307.0 214 67.8
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.7e-81 305.8 214 67.8
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.7e-81 305.8 211 68.7
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 3.5e-81 305.4 216 68.5
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.0e-80 303.9 204 70.6
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.3e-80 303.5 214 67.8
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.3e-80 303.5 214 65.0
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.3e-80 303.5 216 68.1
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.7e-80 303.1 214 67.3
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.3e-80 302.8 214 67.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 5.1e-80 301.6 214 66.8
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.1e-79 300.4 213 68.5
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.5e-79 300.1 214 69.6
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.9e-79 299.7 211 68.7
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.5e-79 299.3 205 70.2
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 4.3e-79 298.5 214 66.4
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 5.6e-79 298.1 214 66.4
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 5.6e-79 298.1 214 66.4
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 5.6e-79 298.1 214 66.4
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.2e-78 297.0 214 66.8
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.6e-78 296.6 214 65.4
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.6e-78 296.6 214 66.4
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 1.6e-78 296.6 214 65.9
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.1e-78 296.2 214 65.9
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.8e-78 295.8 214 65.9
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.1e-77 293.9 205 68.8
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 3.1e-77 292.4 215 65.6
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 3.1e-77 292.4 215 65.6
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 4.0e-77 292.0 215 65.6
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 4.0e-77 292.0 215 65.6
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.0e-77 292.0 214 63.6
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 4.0e-77 292.0 205 68.8
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.0e-77 292.0 214 66.8
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 4.0e-77 292.0 213 65.7
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 6.8e-77 291.2 211 66.4
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.8e-77 291.2 214 63.1
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.2e-76 290.4 214 65.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.2e-76 290.4 211 64.0
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 2.0e-76 289.7 214 65.0
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 2.6e-76 289.3 214 62.6
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.4e-76 288.5 211 66.8
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 7.6e-76 287.7 214 63.6
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.7e-75 286.6 205 68.3
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.7e-75 286.6 205 68.3
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 2.2e-75 286.2 211 65.4
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.9e-75 285.8 214 64.5
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.9e-75 285.8 205 68.3
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 3.7e-75 285.4 261 57.5
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 3.7e-75 285.4 214 65.4
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 3.7e-75 285.4 211 66.8
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.4e-74 283.5 214 63.6
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.4e-74 283.5 214 63.6
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.2e-73 280.4 268 54.1
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.6e-73 278.5 205 66.8
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 6.6e-72 274.6 238 58.4
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.5e-71 273.5 211 59.2
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.5e-71 273.5 211 58.8
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.9e-71 273.1 211 62.6
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 9.6e-71 270.8 211 61.6
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.2e-70 270.4 214 62.1
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.1e-70 269.6 207 62.8
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.1e-70 269.6 207 62.8
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.8e-70 269.2 211 59.7
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 4.7e-70 268.5 211 60.7
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.1e-69 267.3 208 61.5
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 8.9e-69 264.2 207 61.4
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 4.4e-68 261.9 213 62.0
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.1e-66 257.3 206 57.3
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 3.2e-66 255.8 214 58.4
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 5.4e-66 255.0 171 72.5
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 7.1e-66 254.6 214 57.0
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 9.6e-63 244.2 213 59.2
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.4e-60 235.7 211 55.9
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 4.2e-58 228.8 214 56.1
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 2.5e-55 219.5 209 56.0
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.6e-54 216.9 302 40.1
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 6.2e-54 214.9 217 52.1
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 6.2e-54 214.9 217 52.1
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 2.9e-51 206.1 205 51.7
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 6.0e-49 198.4 208 50.0
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.8e-48 196.8 211 47.9
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 2.1e-46 189.9 166 61.4
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 5.8e-44 181.8 237 43.5
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 5.5e-42 175.3 205 42.9
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.6e-41 173.7 193 50.8
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 8.7e-40 167.9 111 70.3
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.1e-37 161.0 110 67.3
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 2.4e-37 159.8 205 45.9
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 4.1e-37 159.1 152 56.6
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.1e-33 145.2 114 67.5
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 3.3e-31 139.4 164 39.0
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.5e-27 125.2 83 65.1
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 3.2e-26 122.9 160 40.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.4e-24 117.5 83 62.7
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 3.0e-24 116.3 114 53.5
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.9e-19 99.8 201 31.8
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 9.4e-18 94.7 189 29.1
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.8e-16 90.5 63 61.9
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 4.8e-14 82.4 186 29.6
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.5e-10 70.1 43 67.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.7e-09 66.6 41 61.0


User provided reference genes

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