Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 2.4e-140 502.3 274 100.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.2e-102 377.1 274 80.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 3.4e-102 375.6 269 77.7
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 3.4e-102 375.6 273 78.0
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 3.4e-102 375.6 272 77.2
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.5e-102 374.4 273 78.8
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.5e-102 374.4 269 75.1
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 9.8e-102 374.0 271 76.8
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.8e-101 372.5 273 76.9
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.8e-101 372.5 273 76.6
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 3.7e-101 372.1 273 76.6
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.7e-101 372.1 273 77.3
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 4.8e-101 371.7 273 76.9
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.8e-101 371.7 273 76.9
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.8e-101 371.7 273 76.9
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 4.8e-101 371.7 273 76.6
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.8e-101 371.7 273 75.5
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.1e-100 370.5 273 77.3
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.1e-100 370.5 273 77.7
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.1e-100 370.5 273 78.0
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 2.4e-100 369.4 273 77.7
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 4.1e-100 368.6 273 76.9
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 4.1e-100 368.6 273 77.7
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 5.4e-100 368.2 268 77.6
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 5.4e-100 368.2 278 76.6
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.2e-99 367.1 273 75.5
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.6e-99 366.7 273 76.2
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 3.5e-99 365.5 270 77.0
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.5e-99 365.5 272 75.7
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.5e-99 365.5 273 74.7
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.5e-99 365.2 273 77.3
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 5.9e-99 364.8 270 76.3
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 5.9e-99 364.8 273 76.2
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.0e-98 364.0 268 78.7
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.0e-98 364.0 275 75.6
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.0e-98 364.0 268 77.6
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.0e-98 364.0 273 76.2
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.0e-98 364.0 273 76.2
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.7e-98 363.2 273 75.8
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 2.9e-98 362.5 267 77.5
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.9e-98 362.5 272 74.6
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.9e-98 362.5 281 75.8
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 6.5e-98 361.3 273 75.8
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 6.5e-98 361.3 273 75.5
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.5e-97 360.1 270 75.6
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.5e-97 360.1 271 77.1
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.5e-97 360.1 273 76.6
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.5e-97 360.1 283 69.6
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.5e-97 360.1 271 74.2
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.9e-97 359.8 273 75.1
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.9e-97 359.8 270 74.8
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 2.5e-97 359.4 277 74.4
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.5e-97 359.4 273 75.1
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 3.2e-97 359.0 273 76.6
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 4.2e-97 358.6 273 74.7
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 5.5e-97 358.2 273 74.4
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 7.2e-97 357.8 273 74.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.2e-97 357.8 268 75.7
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 9.5e-97 357.5 265 76.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 9.5e-97 357.5 273 76.2
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 9.5e-97 357.5 270 74.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.2e-96 357.1 272 72.8
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.6e-96 356.7 274 73.4
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.6e-96 356.7 269 75.1
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 3.6e-96 355.5 275 73.5
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 3.6e-96 355.5 273 74.4
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 3.6e-96 355.5 273 72.5
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 6.1e-96 354.8 273 74.0
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 8.0e-96 354.4 304 70.4
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.0e-95 354.0 272 73.9
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.0e-95 352.4 273 74.0
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.0e-95 352.1 268 74.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 5.2e-95 351.7 273 72.5
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 6.8e-95 351.3 273 75.1
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 6.8e-95 351.3 274 74.1
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 8.8e-95 350.9 272 72.4
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 8.8e-95 350.9 268 74.3
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.2e-94 350.5 270 75.2
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.2e-94 350.5 273 72.5
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.5e-94 350.1 273 74.0
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.5e-94 350.1 273 73.6
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.5e-94 350.1 273 74.0
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.5e-94 350.1 273 73.6
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.4e-94 349.0 273 73.6
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.4e-94 349.0 273 74.4
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 7.5e-94 347.8 273 74.7
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.3e-93 347.1 273 74.0
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.7e-93 346.7 271 73.8
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 3.7e-93 345.5 268 72.4
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 3.7e-93 345.5 268 73.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.7e-93 345.5 249 75.9
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 6.3e-93 344.7 273 72.5
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 6.3e-93 344.7 273 71.4
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 8.3e-93 344.4 273 73.3
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 8.3e-93 344.4 273 73.3
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 8.3e-93 344.4 273 73.3
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 8.3e-93 344.4 273 73.3
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 8.3e-93 344.4 273 73.3
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 8.3e-93 344.4 271 73.4
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 8.3e-93 344.4 265 74.0
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 8.3e-93 344.4 262 74.4
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.1e-92 344.0 265 74.0
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.1e-92 344.0 268 73.9
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.4e-92 343.6 268 72.4
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.4e-92 343.6 273 72.5
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 2.4e-92 342.8 268 73.5
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.1e-92 342.4 253 76.7
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 3.1e-92 342.4 273 72.2
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 4.1e-92 342.0 273 72.9
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 5.4e-92 341.7 265 72.5
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 7.0e-92 341.3 271 72.0
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 9.2e-92 340.9 273 72.5
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.2e-91 340.5 273 71.1
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-91 340.5 265 72.5
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.2e-91 340.5 265 72.5
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.7e-91 339.3 265 73.6
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 3.5e-91 339.0 265 72.1
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.5e-91 339.0 273 71.1
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 4.5e-91 338.6 262 74.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.7e-90 336.7 262 72.5
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.7e-90 336.7 262 72.5
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.7e-90 336.7 262 72.5
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.7e-90 336.7 262 72.5
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.7e-90 336.7 262 72.5
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.7e-90 336.7 265 72.1
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.7e-90 336.7 273 70.7
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.3e-90 336.3 273 71.8
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 5.0e-90 335.1 268 71.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.5e-89 333.6 273 70.3
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.9e-89 333.2 273 70.3
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 7.3e-89 331.3 273 70.0
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 7.3e-89 331.3 247 77.7
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.6e-88 330.1 267 69.3
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 2.8e-88 329.3 273 70.3
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.0e-87 327.4 253 72.7
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.8e-87 326.6 247 75.7
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-86 323.9 240 79.2
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 3.4e-86 322.4 253 73.1
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.8e-86 320.9 245 75.5
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.7e-85 318.9 249 73.1
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.4e-84 317.0 245 73.1
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.4e-84 316.2 270 68.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.5e-83 312.4 273 64.5
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 5.0e-82 308.5 241 73.0
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.6e-78 296.2 260 60.0
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 3.4e-78 295.8 265 63.8
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.7e-77 293.5 267 63.7
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-75 287.0 270 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 7.8e-75 284.6 266 58.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.9e-73 280.0 265 60.4
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 2.5e-73 279.6 296 60.5
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 6.2e-72 275.0 273 60.4
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 6.2e-72 275.0 273 60.4
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 6.2e-72 275.0 250 68.0
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.0e-71 272.3 218 69.3
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 6.2e-64 248.4 207 69.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.9e-61 239.6 199 72.9
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.4e-55 220.7 203 67.0
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 9.0e-55 218.0 190 72.6
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.2e-53 213.4 276 44.9
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.9e-53 213.0 181 74.0
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 9.3e-52 208.0 125 83.2
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.7e-51 206.5 162 69.8
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 3.9e-50 202.6 165 66.1
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 4.3e-49 199.1 273 48.0
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.4e-45 184.9 124 75.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.7e-34 148.7 129 70.5
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 8.7e-34 148.3 128 72.7
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.9e-33 147.1 85 88.2
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.3e-32 144.4 86 84.9
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.3e-29 134.4 85 78.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.9e-29 133.3 85 76.5
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.5e-28 129.0 274 37.6
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 5.5e-28 129.0 122 63.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 9.0e-23 111.7 69 81.2
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 4.3e-17 92.8 121 53.7
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 5.9e-14 82.4 125 47.2
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-13 81.3 95 57.9
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.8e-13 79.7 81 60.5
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 5.5e-12 75.9 146 39.7
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 2.6e-09 67.0 93 41.9
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 4.1e-07 59.7 52 67.3


User provided reference genes

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