Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 7.0e-128 460.7 241 100.0
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 1.0e-94 350.5 241 77.2
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 2.5e-93 345.9 248 77.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 3.3e-93 345.5 240 76.7
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 8.9e-91 337.4 248 73.8
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.2e-90 337.0 245 73.9
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.6e-90 335.9 241 74.7
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 4.4e-90 335.1 244 73.0
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 5.8e-90 334.7 247 72.9
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.9e-89 332.4 198 83.3
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.9e-88 329.7 242 71.9
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.9e-88 329.7 176 90.9
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.4e-88 329.3 243 74.1
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 9.2e-88 327.4 176 89.8
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 9.2e-88 327.4 176 89.8
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.6e-87 326.6 242 71.9
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 2.7e-87 325.9 199 83.4
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 3.5e-87 325.5 242 71.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 3.5e-87 325.5 242 72.3
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 6.0e-87 324.7 241 70.1
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 7.8e-87 324.3 242 71.5
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 7.8e-87 324.3 196 82.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 7.8e-87 324.3 237 72.6
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.0e-86 323.9 242 71.1
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.0e-86 323.9 244 72.5
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.3e-86 323.6 241 71.8
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.7e-86 323.2 244 70.9
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 2.3e-86 322.8 245 71.0
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 2.3e-86 322.8 244 72.5
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 3.0e-86 322.4 242 72.7
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.0e-86 322.4 241 71.4
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.0e-86 322.4 241 71.4
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 3.0e-86 322.4 175 88.0
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.0e-86 322.4 241 71.8
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 3.0e-86 322.4 180 87.2
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.9e-86 322.0 178 86.5
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 5.1e-86 321.6 242 72.3
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 5.1e-86 321.6 190 83.2
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 5.1e-86 321.6 239 69.9
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 6.6e-86 321.2 225 73.8
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 6.6e-86 321.2 235 71.9
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 8.6e-86 320.9 243 72.0
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 8.6e-86 320.9 244 70.9
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.5e-85 320.1 241 71.0
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.5e-85 320.1 183 85.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.5e-85 320.1 242 71.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.5e-85 320.1 239 72.0
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.5e-85 320.1 246 70.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 1.5e-85 320.1 243 72.8
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 1.5e-85 320.1 243 70.8
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.5e-85 320.1 240 71.2
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.5e-85 320.1 246 69.5
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.9e-85 319.7 240 72.5
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.5e-85 319.3 244 70.9
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.3e-85 318.9 241 69.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 5.6e-85 318.2 244 70.9
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.6e-85 318.2 241 70.5
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 7.3e-85 317.8 241 71.4
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 7.3e-85 317.8 241 71.4
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 7.3e-85 317.8 228 75.9
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 7.3e-85 317.8 246 68.7
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 7.3e-85 317.8 242 70.2
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 9.5e-85 317.4 242 71.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 9.5e-85 317.4 176 87.5
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-84 317.0 240 71.2
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-84 317.0 234 72.2
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.2e-84 317.0 198 79.8
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.2e-84 317.0 241 70.1
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.1e-84 316.2 242 70.2
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.8e-84 315.8 245 70.2
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 3.6e-84 315.5 231 72.7
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.6e-84 315.5 235 71.9
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.6e-84 315.5 235 71.9
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.7e-84 315.1 249 67.1
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.7e-84 315.1 191 82.2
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 4.7e-84 315.1 178 85.4
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 6.2e-84 314.7 235 70.6
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 8.1e-84 314.3 247 67.6
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 8.1e-84 314.3 246 68.3
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 8.1e-84 314.3 237 70.0
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 1.4e-83 313.5 191 78.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.4e-83 313.5 263 66.2
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.8e-83 313.2 179 85.5
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.8e-83 313.2 245 67.3
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.8e-83 313.2 239 71.5
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.3e-83 312.8 239 70.7
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 3.1e-83 312.4 244 66.8
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 3.1e-83 312.4 193 81.3
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 5.2e-83 311.6 245 67.3
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 6.8e-83 311.2 244 68.9
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.2e-82 310.5 216 72.2
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 2.6e-82 309.3 243 67.1
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.6e-82 309.3 244 68.0
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 3.4e-82 308.9 181 81.2
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.8e-82 308.1 185 82.2
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 7.6e-82 307.8 195 75.9
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.3e-81 307.0 243 68.7
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.2e-81 306.2 242 69.0
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 3.7e-81 305.4 209 72.7
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.1e-80 303.9 234 67.1
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.4e-80 303.5 176 81.8
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 2.4e-80 302.8 247 69.6
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.4e-80 302.8 175 83.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.6e-79 300.1 174 81.0
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.3e-78 297.0 246 69.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 3.9e-78 295.4 178 79.2
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 4.3e-77 292.0 170 80.6
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 2.1e-76 289.7 163 84.7
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.1e-75 287.3 220 70.5
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 5.2e-75 285.0 243 64.6
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.2e-72 275.4 169 79.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 5.4e-72 275.0 210 65.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.6e-71 273.5 200 68.0
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.5e-69 266.9 220 63.2
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 8.1e-68 261.2 186 65.1
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.6e-66 254.6 223 62.3
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.9e-64 250.0 176 71.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.6e-63 246.9 241 58.1
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 5.1e-62 241.9 220 62.7
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 8.7e-62 241.1 165 67.3
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.0e-54 217.6 122 86.9
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.6e-50 203.0 141 71.6
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.8e-49 199.1 125 77.6
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.3e-45 185.7 123 74.0
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.8e-43 180.3 134 68.7
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.0e-42 176.8 154 59.7
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 3.4e-42 176.0 112 80.4
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 5.9e-42 175.3 104 83.7
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 7.6e-42 174.9 104 82.7
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 8.5e-41 171.4 119 71.4
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.4e-34 149.4 103 72.8
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.7e-31 139.8 82 85.4
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 6.1e-31 138.7 124 59.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 5.1e-30 135.6 147 42.2
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.5e-29 134.0 78 84.6
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.6e-29 133.3 75 88.0
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.2e-28 130.2 87 80.5
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.0e-22 111.3 77 76.6
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 3.8e-17 92.8 77 57.1
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 8.5e-17 91.7 92 57.6
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 6.1e-15 85.5 49 83.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 4.1e-11 72.8 119 47.1
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 2.7e-10 70.1 47 70.2
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 6.1e-07 58.9 28 82.1
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 6.1e-07 58.9 28 82.1
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 8.0e-07 58.5 32 81.2
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 4.0e-06 56.2 43 58.1


User provided reference genes

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