Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 0.0e+00 1133.6 572 100.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.4e-256 889.4 563 82.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.2e-255 886.3 581 80.2
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 4.6e-255 884.4 585 80.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 8.8e-254 880.2 582 79.7
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 3.7e-252 874.8 593 78.1
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.5e-248 860.9 504 86.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.4e-246 856.3 603 76.1
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.8e-246 855.9 564 79.4
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 8.8e-246 853.6 607 74.3
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.2e-239 833.2 540 79.1
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.6e-234 816.2 502 81.5
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.3e-233 813.1 498 81.9
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.6e-231 806.2 502 80.5
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.0e-230 802.0 503 81.5
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.0e-230 802.0 503 81.5
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 8.8e-230 800.4 505 80.4
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.0e-229 799.3 605 71.4
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-229 799.3 520 77.9
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 7.5e-229 797.3 501 80.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.5e-229 797.3 544 75.7
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.8e-228 794.7 599 70.5
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.8e-227 792.7 502 79.5
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.8e-227 792.7 513 78.8
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 9.1e-227 790.4 503 79.5
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.6e-226 789.6 507 77.9
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 3.5e-226 788.5 503 79.1
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 4.5e-226 788.1 502 78.9
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.0e-225 786.9 500 79.2
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.3e-225 786.6 502 79.3
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.7e-225 786.2 502 78.5
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 3.8e-225 785.0 507 77.7
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 5.0e-225 784.6 506 77.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.0e-225 784.6 505 78.0
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.9e-224 782.7 504 77.2
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 4.2e-224 781.6 507 78.3
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 9.4e-224 780.4 549 73.2
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.2e-223 780.0 507 76.7
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.6e-223 778.5 502 79.9
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.0e-223 777.3 552 72.6
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.0e-222 776.9 500 78.2
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.2e-221 773.5 500 78.4
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.5e-221 773.1 594 70.9
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 4.4e-221 771.5 506 76.1
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.3e-220 770.0 504 76.0
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.3e-220 767.7 505 75.8
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.4e-219 765.8 532 72.9
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.9e-217 758.8 500 75.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 6.6e-217 757.7 594 69.4
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.1e-216 756.9 506 77.3
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-216 756.1 510 76.3
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 6.8e-214 747.7 507 74.6
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.2e-213 746.9 590 67.5
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.5e-213 746.5 506 76.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.5e-213 746.5 502 75.5
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 4.4e-213 745.0 501 75.4
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 7.5e-213 744.2 511 73.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.5e-213 744.2 548 70.6
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 9.8e-213 743.8 500 74.4
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 9.8e-213 743.8 500 74.4
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 9.8e-213 743.8 502 75.1
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.3e-212 743.4 502 74.7
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.7e-212 743.0 500 74.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.7e-212 743.0 500 74.0
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.2e-212 742.7 540 72.2
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.9e-212 741.5 500 74.4
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 8.3e-212 740.7 500 74.8
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.4e-211 740.0 500 74.0
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.4e-211 740.0 594 67.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.8e-211 739.6 500 74.4
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.4e-211 739.2 500 73.6
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.4e-211 739.2 500 73.6
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 2.4e-211 739.2 664 61.1
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.1e-211 738.4 559 70.8
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 3.5e-210 735.3 500 74.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 4.5e-210 734.9 502 73.7
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.9e-210 734.6 506 73.5
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.0e-209 733.8 500 73.6
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.8e-209 731.9 506 73.3
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.1e-208 730.3 505 72.5
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.0e-206 723.8 507 73.4
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.2e-205 720.3 501 73.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.4e-204 714.5 560 66.2
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.5e-202 708.8 550 68.7
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 3.0e-201 705.7 593 65.3
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 9.5e-200 700.7 502 71.7
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.0e-199 697.6 461 77.4
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 6.8e-198 694.5 504 70.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.6e-197 692.6 450 77.3
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 8.3e-196 687.6 652 60.1
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.0e-193 680.6 468 77.4
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.5e-192 676.0 503 71.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.2e-191 673.7 576 63.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.8e-190 669.8 634 61.0
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 3.1e-190 669.1 510 68.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.1e-187 660.6 506 68.4
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.1e-187 660.6 477 71.3
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.4e-187 658.3 459 73.2
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 6.6e-185 651.4 491 65.6
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-183 647.1 525 65.1
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 5.4e-179 631.7 502 66.9
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 9.6e-168 594.3 367 80.9
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.8e-167 592.0 439 70.4
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.5e-165 585.5 443 64.8
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-162 577.0 523 61.0
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 6.2e-159 565.1 558 57.0
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.6e-138 495.7 441 56.2
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.0e-137 493.0 345 74.2
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.0e-133 480.3 514 52.1
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 2.5e-131 473.4 497 51.3
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.2e-131 473.0 451 53.2
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.3e-127 461.1 504 48.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.4e-126 457.6 504 53.8
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.7e-125 451.8 449 54.6
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.2e-124 450.3 345 71.3
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.0e-120 437.2 266 86.1
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.1e-118 431.4 310 72.3
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.5e-115 421.0 428 55.4
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 7.2e-107 392.1 489 45.0
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.6e-90 337.8 282 58.9
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 6.0e-85 319.3 204 75.5
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.3e-76 291.6 273 59.0
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.6e-74 284.6 202 67.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.4e-70 271.6 173 78.6
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 6.8e-65 252.7 276 52.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.4e-64 250.4 405 39.0
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.2e-63 247.7 262 47.7
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 6.4e-63 246.1 156 80.1
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.2e-61 241.9 178 68.0
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 4.0e-57 226.9 291 43.6
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.0e-56 224.6 177 69.5
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-54 217.6 201 59.2
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.3e-54 215.7 136 75.7
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 7.1e-46 189.5 113 81.4
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.3e-44 184.5 128 69.5
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.4e-41 174.5 272 40.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.9e-37 159.5 128 60.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.4e-35 152.9 122 62.3
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 2.0e-32 144.8 105 69.5
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 7.6e-32 142.9 83 78.3
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 5.0e-31 140.2 269 33.8
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.7e-27 125.9 95 68.4
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.8e-25 121.7 269 35.7
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.3e-25 120.2 120 50.8
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.9e-22 111.7 232 37.9
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.7e-21 107.8 112 50.0
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.3e-19 100.9 96 51.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.3e-18 99.0 56 87.5
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.8e-18 97.8 71 69.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.8e-18 97.8 75 65.3
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 8.2e-18 96.3 57 86.0
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.1e-17 95.9 91 50.5
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 4.1e-17 94.0 71 66.2
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.2e-14 83.2 54 74.1
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.1e-12 77.0 257 28.0
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.7e-10 72.0 94 40.4
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.8e-09 68.6 108 37.0
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 5.3e-09 67.0 284 23.2
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 5.9e-08 63.5 36 83.3
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.9e-07 61.2 40 80.0
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 5.5e-06 57.0 52 51.9


User provided reference genes

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