Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.6e-106 389.8 248 100.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 2.8e-79 299.3 273 73.6
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 2.8e-79 299.3 273 73.6
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 6.8e-78 294.7 273 72.5
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 8.9e-78 294.3 274 72.3
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 2.4e-75 286.2 273 73.3
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 5.4e-75 285.0 273 73.3
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 9.2e-75 284.3 272 69.5
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 3.0e-73 279.3 277 72.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 6.6e-73 278.1 270 72.2
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.5e-72 276.2 273 70.0
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 2.5e-72 276.2 273 70.0
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 1.8e-70 270.0 273 70.3
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 1.8e-70 270.0 267 73.4
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 2.3e-70 269.6 277 68.6
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 2.3e-70 269.6 276 68.5
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 4.0e-70 268.9 274 65.3
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 5.2e-70 268.5 273 69.2
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 5.2e-70 268.5 270 68.1
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 8.9e-70 267.7 275 68.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 1.5e-69 266.9 274 67.2
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 1.5e-69 266.9 258 67.8
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.0e-69 266.5 275 67.6
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 2.6e-69 266.2 274 66.1
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 2.6e-69 266.2 273 70.7
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 7.5e-69 264.6 268 68.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 7.5e-69 264.6 273 66.7
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 2.2e-68 263.1 274 71.9
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 3.7e-68 262.3 276 66.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 3.7e-68 262.3 273 72.5
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 6.4e-68 261.5 275 69.1
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 8.3e-68 261.2 275 67.3
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 1.1e-67 260.8 264 70.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.1e-67 260.8 271 69.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 1.9e-67 260.0 260 72.3
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 1.9e-67 260.0 275 68.7
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 1.9e-67 260.0 161 82.0
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 3.2e-67 259.2 161 80.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.1e-67 258.8 268 67.9
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 7.1e-67 258.1 262 70.2
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 9.2e-67 257.7 274 71.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 9.2e-67 257.7 273 62.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.2e-66 257.3 161 80.7
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 3.5e-66 255.8 270 73.0
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.5e-66 255.8 244 70.5
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.5e-66 255.8 244 70.5
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 7.8e-66 254.6 270 70.7
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 7.8e-66 254.6 271 70.5
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 1.0e-65 254.2 161 77.6
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 1.0e-65 254.2 161 78.9
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 1.0e-65 254.2 161 79.5
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 1.0e-65 254.2 161 79.5
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 1.0e-65 254.2 161 78.9
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 3.0e-65 252.7 274 67.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 3.0e-65 252.7 161 78.9
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.9e-65 252.3 161 78.3
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.9e-65 252.3 266 62.0
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.6e-65 251.5 267 63.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 1.1e-64 250.8 262 64.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 1.5e-64 250.4 261 70.5
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 1.9e-64 250.0 263 60.1
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 3.3e-64 249.2 161 77.0
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 3.3e-64 249.2 154 81.8
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 4.3e-64 248.8 161 77.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 4.3e-64 248.8 161 77.6
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 5.6e-64 248.4 194 78.4
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 7.3e-64 248.1 272 67.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 1.6e-63 246.9 161 75.8
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 1.6e-63 246.9 160 76.9
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 2.1e-63 246.5 261 67.4
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 2.8e-63 246.1 261 65.5
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 8.1e-63 244.6 161 75.8
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 1.1e-62 244.2 272 64.7
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 1.4e-62 243.8 160 75.6
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 6.8e-62 241.5 161 73.9
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-61 240.4 270 62.6
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 2.6e-61 239.6 162 75.9
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 2.6e-61 239.6 161 72.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 3.4e-61 239.2 161 72.0
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 4.4e-61 238.8 161 71.4
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 4.4e-61 238.8 161 71.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 7.6e-61 238.0 161 70.8
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 7.6e-61 238.0 154 77.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-60 237.3 267 62.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 1.7e-60 236.9 162 74.7
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 3.8e-60 235.7 161 71.4
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 3.8e-60 235.7 161 72.7
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 4.9e-60 235.3 263 63.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 6.4e-60 235.0 161 71.4
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 1.9e-59 233.4 161 71.4
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 1.9e-59 233.4 161 71.4
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 1.9e-59 233.4 261 55.9
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 1.9e-59 233.4 263 63.1
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 2.4e-59 233.0 161 70.8
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 2.4e-59 233.0 161 70.8
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 7.1e-59 231.5 160 70.0
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 9.2e-59 231.1 160 69.4
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 1.2e-58 230.7 161 71.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 4.6e-58 228.8 163 69.3
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 4.6e-58 228.8 163 69.3
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 6.0e-58 228.4 163 68.7
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 1.3e-57 227.3 162 69.1
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 1.3e-57 227.3 161 69.6
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 1.7e-57 226.9 163 68.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 1.7e-57 226.9 163 68.1
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 2.3e-57 226.5 163 68.1
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.5e-56 223.8 177 66.1
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 7.3e-56 221.5 153 73.2
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 7.3e-56 221.5 161 67.1
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 2.8e-55 219.5 141 80.9
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-54 217.2 121 87.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.6e-53 213.0 159 64.8
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 4.4e-53 212.2 135 80.7
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 4.4e-53 212.2 161 62.1
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 2.9e-52 209.5 267 55.1
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.9e-52 208.8 155 66.5
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 4.2e-51 205.7 275 55.6
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 2.7e-50 203.0 138 74.6
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 1.3e-49 200.7 160 59.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 2.3e-49 199.9 134 76.9
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 3.0e-49 199.5 161 59.6
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 6.6e-49 198.4 151 64.9
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.3e-48 196.1 160 58.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.3e-48 196.1 160 58.1
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.2e-45 187.6 162 59.9
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 2.6e-45 186.4 161 60.9
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.4e-43 180.6 267 54.7
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 1.3e-39 167.5 120 70.8
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.3e-39 167.5 155 53.5
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.3e-39 167.5 189 69.8
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.9e-36 156.4 170 46.5
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.1e-34 150.2 162 46.9
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 2.2e-07 60.5 128 61.7
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 4.8e-07 59.3 57 54.4
Ah.04g156720 Amaranthus hybridus HOM05D002037 ORTHO05D005261 2.4e-06 57.0 39 74.4


User provided reference genes

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