Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.5e-64 249.2 112 100.0
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.5e-64 249.2 112 100.0
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 5.1e-49 197.6 112 78.6
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 5.1e-49 197.6 112 78.6
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 3.7e-47 191.4 112 72.3
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 1.2e-45 186.4 110 75.5
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 2.6e-45 185.3 110 75.5
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 69.6
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.1e-43 179.9 112 66.1
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 5.5e-43 177.6 112 68.8
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 5.5e-43 177.6 112 68.8
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 2.7e-42 175.3 112 67.0
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.7e-42 175.3 112 65.2
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 3.6e-42 174.9 112 66.1
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 3.6e-42 174.9 112 65.2
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 6.1e-42 174.1 110 69.1
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 6.7e-41 170.6 112 67.9
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 6.7e-41 170.6 110 67.3
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 5.7e-40 167.5 110 64.5
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 5.7e-40 167.5 112 62.5
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 7.4e-40 167.2 110 66.4
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 9.7e-40 166.8 112 63.4
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.3e-39 164.1 113 63.7
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.3e-39 164.1 113 63.7
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.3e-39 164.1 113 63.7
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.3e-39 164.1 113 63.7
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 1.4e-38 162.9 112 63.4
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 4.1e-38 161.4 113 63.7
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 6.9e-38 160.6 112 61.6
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 6.9e-38 160.6 112 60.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 2.6e-37 158.7 112 61.6
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 5.9e-37 157.5 115 61.7
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 7.7e-37 157.1 113 61.9
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 7.7e-37 157.1 113 61.1
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.7e-36 156.0 113 61.9
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.7e-36 156.0 113 61.9
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.7e-36 156.0 113 61.9
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 3.8e-36 154.8 113 61.1
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 8.5e-36 153.7 113 62.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 1.9e-35 152.5 113 58.4
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.9e-35 152.5 116 58.6
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 3.2e-35 151.8 95 68.4
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 3.2e-35 151.8 113 59.3
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 4.2e-35 151.4 108 60.2
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 7.2e-35 150.6 113 59.3
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 7.2e-35 150.6 113 60.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.2e-34 149.8 110 58.2
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.6e-34 149.4 112 57.1
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 1.6e-34 149.4 112 57.1
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 2.7e-34 148.7 113 61.9
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 3.6e-34 148.3 113 60.2
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 4.7e-34 147.9 113 55.8
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 6.1e-34 147.5 112 56.2
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.4e-33 146.4 108 58.3
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 1.4e-33 146.4 108 59.3
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 2.3e-33 145.6 112 56.2
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 2.3e-33 145.6 112 56.2
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 3.9e-33 144.8 113 58.4
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 5.1e-33 144.4 115 59.1
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 6.7e-33 144.1 112 56.2
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 6.7e-33 144.1 113 54.0
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.1e-32 143.3 97 61.9
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 2.0e-32 142.5 112 54.5
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 2.0e-32 142.5 112 52.7
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 4.4e-32 141.4 113 54.9
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 5.7e-32 141.0 108 55.6
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.7e-32 141.0 108 55.6
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.7e-32 141.0 108 55.6
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.7e-32 141.0 108 55.6
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.7e-32 141.0 108 55.6
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.7e-32 141.0 108 55.6
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.7e-32 141.0 108 55.6
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 3.7e-31 138.3 104 62.5
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 8.2e-31 137.1 112 57.1
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.1e-30 136.7 112 56.2
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.8e-30 136.0 112 56.2
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.8e-30 136.0 102 56.9
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 3.1e-30 135.2 112 52.7
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 4.1e-30 134.8 112 56.2
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 5.3e-30 134.4 112 56.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 9.1e-30 133.7 112 56.2
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 2.0e-29 132.5 112 58.9
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 1.0e-28 130.2 112 52.7
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.3e-28 129.8 114 53.5
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 52.7
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 2.2e-28 129.0 112 52.7
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 52.7
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 52.7
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 52.7
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 52.7
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 52.7
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 52.7
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.8e-28 128.3 112 52.7
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 5.0e-28 127.9 112 52.7
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 51.8
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 52.2
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.4e-27 126.3 113 50.4
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 1.4e-27 126.3 112 52.7
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 1.9e-27 125.9 112 51.8
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 52.2
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 49.6
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 7.2e-27 124.0 113 52.2
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.2e-26 123.2 113 52.2
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 1.6e-26 122.9 113 51.3
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 1.6e-26 122.9 113 51.3
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 1.6e-26 122.9 113 51.3
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.0e-25 120.2 112 48.2
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 1.4e-25 119.8 81 60.5
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.0e-25 118.6 74 68.9
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 2.6e-24 115.5 139 46.8
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 5.7e-24 114.4 86 57.0
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.7e-23 112.8 113 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.7e-23 112.8 111 46.8
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 4.1e-22 108.2 109 46.8
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 3.5e-21 105.1 111 44.1
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 7.7e-21 104.0 64 68.8
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 1.7e-20 102.8 113 46.0
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 5.0e-20 101.3 68 63.2
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.9e-19 99.4 70 62.9
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 5.5e-19 97.8 111 43.2
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 1.6e-18 96.3 79 55.7
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 2.7e-18 95.5 76 53.9
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 6.1e-18 94.4 98 44.9
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.0e-17 93.6 115 44.3
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 8.8e-17 90.5 68 61.8
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.7e-15 86.3 68 58.8
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.8e-15 85.5 113 39.8
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 5.3e-14 81.3 55 60.0
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 2.7e-13 79.0 71 52.1
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 5.5e-11 71.2 71 42.3
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 6.8e-09 64.3 65 47.7
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.6e-08 62.4 122 27.9
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 8.3e-07 57.4 123 28.5
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.8e-06 56.2 119 32.8
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.1e-06 55.5 124 27.4
EL10Ac3g06123 Beta vulgaris HOM05D002276 ORTHO05D002381 9.1e-06 53.9 82 31.7


User provided reference genes

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