Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2333.1 1249 100.0
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1622.8 1323 71.9
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1557.7 1335 68.2
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1555.8 1335 67.4
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1530.8 1333 67.1
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1525.0 1329 66.2
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1523.5 1335 66.8
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1520.4 1329 66.0
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1518.8 1331 67.0
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1486.1 1339 65.8
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1479.2 1325 65.4
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1457.2 1327 64.7
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1435.2 1330 64.4
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1431.8 1347 64.1
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1335.1 1347 60.1
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1328.2 1356 59.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1320.8 1346 59.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1297.0 1331 59.6
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1289.6 1338 57.8
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1281.2 1334 58.5
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1278.8 1333 58.5
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1271.5 1339 57.7
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1271.1 1348 56.7
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1269.2 1334 58.8
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1256.1 1337 56.6
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1255.7 1337 56.7
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1253.8 1341 57.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1245.3 1336 56.4
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1245.0 1342 57.2
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1239.2 1354 56.2
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1236.5 1335 57.7
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1229.9 1344 56.5
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1226.1 1335 57.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1216.4 1319 56.8
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1215.3 1187 59.9
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1201.4 1343 55.2
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1189.9 1341 55.4
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1188.3 1352 54.1
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1185.6 1342 55.8
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1184.9 1342 55.7
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1182.5 1342 55.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1180.6 1340 55.6
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1178.3 1343 54.9
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1171.0 1337 54.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1169.5 1334 54.5
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1167.9 1334 55.3
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1167.1 1346 54.2
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1160.2 1347 53.5
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1155.2 1336 53.8
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1153.3 1319 54.7
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1152.1 1336 53.6
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1147.1 1353 54.3
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1146.7 1206 57.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1146.3 1339 53.8
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1143.3 1427 52.2
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1140.9 1366 54.0
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1135.6 1332 54.5
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1116.3 1348 52.0
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1115.9 1369 51.6
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1115.5 1336 52.4
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1112.8 1347 52.7
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1112.4 1333 53.5
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1106.3 1311 53.6
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1106.3 1347 52.6
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1105.9 1344 52.0
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1105.9 1345 52.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1105.5 1239 54.7
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1104.7 1327 53.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1100.5 1285 55.8
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1097.4 1258 54.1
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1095.1 1338 51.6
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1094.7 1315 53.2
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1088.2 1345 51.2
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 1.1e-309 1067.0 1341 51.8
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 9.3e-309 1063.9 1364 50.1
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 1.1e-306 1057.0 1338 51.5
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 6.3e-305 1051.2 1318 51.4
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.5e-303 1046.6 1323 52.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 1.0e-299 1033.9 1336 51.3
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.2e-295 1020.4 1341 50.0
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 1.1e-293 1013.8 1314 51.1
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 1.8e-291 1006.5 1363 49.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 8.8e-291 1004.2 1294 51.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 4.2e-285 985.3 1325 48.6
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 5.7e-282 974.9 1381 47.7
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 7.4e-282 974.5 1326 48.0
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 9.7e-282 974.2 1335 49.9
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 5.3e-280 968.4 1334 48.7
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 1.2e-279 967.2 1364 46.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 5.9e-279 964.9 1353 47.3
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 6.5e-278 961.4 1395 45.9
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 8.5e-278 961.1 1369 46.8
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 6.1e-276 954.9 1320 49.2
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 4.4e-274 948.7 1375 46.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 9.7e-274 947.6 1375 46.0
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 1.7e-273 946.8 1373 46.1
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 2.2e-273 946.4 1375 46.8
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 2.2e-273 946.4 1375 45.9
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 8.3e-273 944.5 1367 45.9
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 1.1e-272 944.1 1389 46.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 3.5e-271 939.1 1389 46.0
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 3.5e-271 939.1 1387 46.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 3.5e-271 939.1 1389 46.0
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 7.7e-271 937.9 1375 46.3
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 8.8e-267 924.5 1301 47.3
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 5.7e-266 921.8 1340 46.8
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 9.1e-264 914.4 1365 46.1
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 9.1e-264 914.4 1342 46.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 3.4e-258 896.0 1335 47.0
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 7.5e-234 815.1 1313 44.1
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 2.1e-231 807.0 886 54.2
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 3.5e-231 806.2 1348 43.8
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 2.1e-228 797.0 773 60.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 2.4e-224 783.5 1311 43.0
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 4.0e-203 713.0 1355 40.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 1.2e-202 711.4 819 53.2
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.2e-200 703.4 1373 40.6
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.2e-200 703.4 1373 40.6
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 5.8e-194 682.6 1417 39.3
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.9e-193 680.2 972 47.2
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.5e-192 677.2 784 52.7
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 1.7e-185 654.4 1338 38.1
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 3.7e-180 636.7 1344 38.6
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.2e-144 516.9 543 58.4
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 6.6e-137 493.0 1320 33.7
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.2e-127 462.2 761 41.7
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.9e-121 440.7 464 58.0
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.3e-95 355.9 417 55.9
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.1e-91 342.8 421 50.4
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.7e-89 333.2 908 32.5
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.4e-78 298.5 387 51.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.5e-72 279.3 283 54.1
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.2e-67 260.4 231 65.4
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.8e-65 255.8 236 65.7
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 5.0e-60 237.7 199 67.8
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.5e-60 237.3 576 32.1
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 9.4e-59 233.4 383 38.4
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.8e-57 229.2 403 41.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.0e-57 228.4 293 51.9
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 3.6e-42 178.3 269 48.0
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.4e-41 176.4 760 26.2
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.7e-39 169.5 363 36.6
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 3.5e-37 161.8 238 46.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.3e-31 143.3 222 42.8
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.2e-31 142.5 560 30.2
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 7.3e-27 127.5 115 63.5
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.3e-15 90.1 94 47.9
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.9e-15 89.0 717 23.0
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 4.3e-11 75.1 153 37.9
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-10 73.6 203 36.5
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.6e-10 73.2 199 35.2


User provided reference genes

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