Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 3545.0 1940 100.0
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2709.1 1906 79.2
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2693.7 1901 78.2
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2671.7 1930 77.1
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2660.9 1898 77.4
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2655.6 1898 77.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2648.6 1816 78.2
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2620.9 1819 77.6
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2579.3 1920 75.1
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2569.7 1855 76.9
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2545.4 1906 74.6
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2535.0 1901 74.9
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2499.9 1910 74.0
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2428.7 1913 71.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2308.1 1907 67.8
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2300.8 1934 67.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2298.9 1911 67.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2296.5 1939 67.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2274.2 1834 67.8
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2262.3 1913 67.3
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2253.4 1909 67.3
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2251.5 1913 67.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2244.5 1830 67.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2242.2 1868 67.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2234.9 1878 67.4
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2231.4 1803 67.4
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2229.9 1865 67.1
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2226.8 1901 66.9
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2208.3 1868 67.2
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2204.9 1940 65.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2203.3 1855 65.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2201.8 1866 65.9
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2198.7 1915 65.6
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2190.2 1845 64.9
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2184.5 1912 66.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2176.7 1893 65.5
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2166.3 1924 64.8
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2161.0 1921 64.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2152.5 1919 64.7
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2149.4 1913 65.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2148.6 1916 65.3
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2137.1 1916 65.0
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2136.3 1916 64.8
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2130.1 2016 61.7
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2122.8 1948 63.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2119.0 1800 64.6
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2112.8 1919 63.5
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2111.6 1906 64.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2109.3 1921 61.9
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2105.5 1911 63.4
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2100.1 1918 62.9
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2095.9 1916 63.5
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2094.3 1920 63.2
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2082.0 1899 64.1
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2071.6 1924 62.3
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2060.8 1812 63.2
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2054.3 1743 67.5
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2054.3 1827 62.7
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2041.5 1922 62.1
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2040.4 1928 60.0
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2031.5 1924 61.4
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2017.7 1930 60.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2009.2 1839 60.7
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2008.0 1920 60.8
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2006.9 1829 61.0
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2005.7 1863 62.4
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1995.7 1910 62.1
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1988.4 1917 60.5
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1983.4 1815 61.0
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1974.5 1797 60.8
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1966.8 1806 61.3
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1956.4 1855 59.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1946.8 1907 60.0
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1945.2 1831 59.8
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1937.2 1865 60.1
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1904.0 1854 58.2
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1884.8 1826 58.8
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1870.9 1836 57.6
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1865.9 1837 57.4
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1865.5 1901 57.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1855.9 1900 57.7
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1837.4 1954 57.1
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1825.8 1870 56.2
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1818.5 1702 60.5
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1808.1 1866 55.8
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1798.9 1934 54.5
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1790.8 1821 55.8
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1768.8 1907 55.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1760.3 1841 54.5
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1756.9 1874 53.7
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1755.3 1875 53.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1755.3 1874 53.6
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1753.4 1870 54.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1751.5 1875 53.9
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1744.6 1882 53.9
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1744.2 1882 54.0
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1743.4 1867 55.0
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1741.5 1882 53.6
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1741.5 1882 53.6
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1740.3 1868 54.1
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1732.2 1937 55.2
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1731.8 1926 53.5
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1724.9 1875 53.2
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1707.6 1734 57.4
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1619.4 1323 71.9
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1601.3 1853 52.0
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1552.7 1853 50.0
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1506.5 1846 49.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1505.0 1243 66.6
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1468.8 1246 66.1
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1395.9 1931 47.5
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1394.0 1922 45.9
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1394.0 1922 45.9
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1379.4 1965 45.0
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1365.1 1348 56.3
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1364.4 1883 45.5
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1362.1 1494 55.4
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1357.8 1858 47.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1349.0 1245 62.6
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1221.5 1497 51.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1209.9 1085 65.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1196.0 1787 43.4
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1089.3 919 63.5
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-311 1073.9 1014 62.6
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-281 974.2 860 64.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.1e-266 924.9 832 65.3
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.2e-259 901.4 1899 37.0
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 3.0e-253 880.2 1458 43.7
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.1e-251 872.1 1853 35.1
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 6.9e-242 842.4 834 58.2
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.8e-235 820.5 815 56.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.7e-203 714.9 717 56.8
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.4e-191 672.5 576 66.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.0e-184 650.2 659 56.4
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.2e-180 639.0 652 53.5
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 8.9e-165 586.3 497 63.0
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 7.5e-164 583.2 616 55.7
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.9e-155 554.7 423 73.0
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.2e-138 496.5 493 61.1
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.8e-131 474.6 493 58.8
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.2e-115 422.2 455 52.7
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 3.9e-104 384.8 1273 27.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.6e-100 372.1 350 57.1
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 5.9e-76 291.2 273 73.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.7e-76 290.8 654 33.3
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.9e-74 286.2 436 42.7
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.4e-71 275.0 870 31.1
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 8.2e-70 270.8 233 66.5
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 9.1e-69 267.3 235 68.1
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.2e-68 266.9 265 59.2
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.7e-68 265.8 470 36.2
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.7e-67 263.1 416 42.1
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.2e-63 250.4 2088 21.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 4.5e-60 238.4 200 67.5
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.0e-36 159.8 156 77.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 8.1e-33 147.9 225 43.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.1e-20 106.7 92 62.0
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 7.6e-15 88.2 78 56.4
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.9e-13 83.6 49 71.4
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 4.6e-12 79.0 167 36.5
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.3e-11 76.6 58 60.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.6e-09 69.3 33 87.9
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 6.2e-09 68.6 104 77.9
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 8.4e-06 58.2 59 52.5


User provided reference genes

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