Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.5e-209 732.6 371 100.0
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 6.7e-138 494.6 354 75.1
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 5.5e-132 474.9 354 71.8
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 1.3e-125 453.8 358 68.7
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 2.2e-125 453.0 358 68.2
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 6.5e-125 451.4 355 67.0
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 7.2e-124 448.0 353 67.7
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 1.4e-122 443.7 342 68.1
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 1.4e-122 443.7 339 68.4
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 1.8e-122 443.4 339 68.1
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 5.7e-121 438.3 357 63.9
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 1.3e-120 437.2 353 65.4
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 8.2e-120 434.5 362 64.6
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 1.8e-119 433.3 357 65.3
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 7.0e-119 431.4 354 65.5
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 1.6e-118 430.3 344 66.9
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 3.5e-118 429.1 344 67.2
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 6.5e-117 424.9 345 65.8
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 6.5e-117 424.9 362 63.5
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 8.5e-117 424.5 360 63.3
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 1.1e-116 424.1 340 66.2
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 1.9e-116 423.3 362 63.3
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 9.4e-116 421.0 345 65.5
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 1.2e-115 420.6 351 64.1
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 2.1e-115 419.9 348 63.8
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 2.7e-115 419.5 366 62.6
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 4.7e-115 418.7 366 62.8
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 6.1e-115 418.3 342 65.8
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 6.1e-115 418.3 362 61.6
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 8.0e-115 417.9 351 63.8
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 1.0e-114 417.5 346 64.2
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 1.4e-114 417.2 366 62.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 2.3e-114 416.4 345 64.3
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 3.0e-114 416.0 364 62.1
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 5.2e-114 415.2 346 64.5
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 5.2e-114 415.2 340 65.3
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 6.8e-114 414.8 345 63.8
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 6.8e-114 414.8 346 64.5
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 4.4e-113 412.1 346 64.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 7.5e-113 411.4 361 62.0
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 2.2e-112 409.8 355 62.0
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 6.3e-112 408.3 331 64.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 5.4e-111 405.2 360 61.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 5.4e-111 405.2 347 62.2
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 7.0e-111 404.8 359 60.7
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 9.1e-111 404.4 347 61.7
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 7.7e-110 401.4 344 61.3
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 6.5e-109 398.3 343 62.1
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 1.5e-108 397.1 356 59.8
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 1.5e-108 397.1 343 62.1
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 9.4e-108 394.4 343 58.6
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 2.7e-107 392.9 348 60.6
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 1.4e-106 390.6 346 61.6
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 1.4e-106 390.6 341 59.5
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 2.3e-106 389.8 353 58.1
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 2.3e-106 389.8 364 59.9
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 4.0e-106 389.0 340 61.2
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 4.0e-106 389.0 361 57.9
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 4.0e-106 389.0 361 57.6
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 1.2e-105 387.5 334 60.8
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 3.4e-105 386.0 355 58.3
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.5e-105 384.8 342 59.1
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 1.7e-104 383.6 354 58.5
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 1.7e-104 383.6 361 57.1
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 3.7e-104 382.5 343 58.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 4.9e-104 382.1 345 59.1
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 1.1e-103 380.9 322 62.4
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 1.4e-103 380.6 348 58.0
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 2.4e-103 379.8 349 58.2
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 2.4e-103 379.8 351 57.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.4e-103 379.8 352 57.4
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 3.1e-103 379.4 350 58.3
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 3.1e-103 379.4 344 59.0
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 3.1e-103 379.4 338 58.3
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 3.1e-103 379.4 341 58.4
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 4.1e-103 379.0 344 59.0
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 5.4e-103 378.6 350 57.1
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.0e-103 378.3 333 59.8
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 9.2e-103 377.9 349 58.2
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 2.0e-102 376.7 344 58.7
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 2.7e-102 376.3 350 58.6
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 7.7e-102 374.8 337 57.6
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 1.0e-101 374.4 349 57.9
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 1.0e-101 374.4 337 58.2
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 1.3e-101 374.0 342 58.8
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 1.3e-101 374.0 342 58.8
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 1.7e-101 373.6 350 57.1
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 2.3e-101 373.2 345 58.8
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 2.3e-101 373.2 345 59.4
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 8.6e-101 371.3 345 59.4
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 1.1e-100 370.9 350 58.0
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 1.5e-100 370.5 343 58.9
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 5.6e-100 368.6 358 56.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 7.3e-100 368.2 345 58.8
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 7.3e-100 368.2 363 55.6
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 9.5e-100 367.9 340 57.9
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 2.8e-99 366.3 374 55.3
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 8.0e-99 364.8 350 55.4
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 1.0e-98 364.4 555 42.3
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 4.0e-98 362.5 324 60.2
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 1.2e-97 360.9 343 55.1
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 7.5e-97 358.2 344 57.8
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 1.3e-96 357.5 355 53.5
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 1.3e-96 357.5 343 54.8
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 3.7e-96 355.9 348 55.5
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 3.2e-95 352.8 369 52.8
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 1.6e-94 350.5 362 55.5
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 7.8e-94 348.2 315 60.0
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 3.3e-92 342.8 331 57.1
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 6.2e-91 338.6 387 52.5
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 1.1e-87 327.8 340 53.2
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 3.6e-83 312.8 344 48.8
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 6.8e-82 308.5 355 47.6
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 1.7e-80 303.9 334 50.6
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.7e-70 270.0 358 43.9
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.0e-61 241.5 329 46.8
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.5e-60 237.7 205 59.0
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 5.1e-45 186.0 362 34.0
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.9e-44 184.1 296 39.5
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 3.7e-43 179.9 273 41.4
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 4.0e-42 176.4 374 34.0
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 5.3e-42 176.0 167 59.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 4.1e-34 149.8 116 63.8
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 9.0e-34 148.7 419 27.0
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 3.4e-33 146.7 104 70.2
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.2e-32 144.1 116 62.1
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 6.5e-32 142.5 145 55.2
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.1e-31 141.7 105 70.5
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.5e-31 139.4 88 78.4
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.4e-28 129.0 89 76.4
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.6e-27 127.9 307 28.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.7e-24 117.9 96 58.3
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.9e-23 114.4 93 58.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 9.7e-20 102.1 68 72.1
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.3e-19 101.7 59 83.1
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 3.2e-15 87.0 72 62.5
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 2.0e-12 77.8 123 44.7
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.8e-08 63.5 35 82.9
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 9.4e-07 58.9 65 55.4
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 8.0e-06 55.8 71 45.1


User provided reference genes

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