Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.3e-166 589.0 329 100.0
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 1.3e-129 466.8 335 73.7
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 5.0e-129 464.9 333 73.6
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.9e-123 446.4 335 70.7
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.2e-122 443.7 311 73.6
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.9e-120 436.4 303 71.9
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.5e-120 436.0 333 69.4
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 5.6e-120 434.9 320 70.3
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 9.5e-120 434.1 327 75.8
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 6.2e-119 431.4 332 72.6
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 3.1e-118 429.1 323 68.7
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.0e-117 426.4 323 68.4
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 7.6e-117 424.5 329 71.4
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.2e-116 422.9 312 70.2
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 4.9e-116 421.8 332 75.3
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 8.4e-116 421.0 321 66.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.4e-116 421.0 312 69.9
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.1e-115 420.6 338 66.0
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.1e-115 420.6 321 68.5
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 1.4e-115 420.2 316 71.2
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 4.1e-115 418.7 318 68.2
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 9.2e-115 417.5 292 71.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 2.7e-114 416.0 296 70.9
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 6.0e-114 414.8 309 69.6
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.0e-113 414.1 315 69.2
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.3e-113 413.7 292 75.0
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.3e-113 413.7 292 75.0
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.7e-113 413.3 298 69.1
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.3e-113 412.9 324 65.1
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 5.1e-113 411.8 334 68.9
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 5.1e-113 411.8 334 68.9
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 6.6e-113 411.4 332 67.8
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 8.7e-113 411.0 317 66.6
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 3.3e-112 409.1 329 65.0
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 3.3e-112 409.1 325 64.0
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 4.3e-112 408.7 322 65.5
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 7.3e-112 407.9 319 67.7
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 7.3e-112 407.9 328 66.5
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 9.6e-112 407.5 316 66.1
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 9.6e-112 407.5 279 72.0
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.6e-111 406.8 220 86.4
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.1e-111 406.4 322 65.8
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.8e-111 406.0 315 66.3
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 3.6e-111 405.6 319 66.5
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 8.1e-111 404.4 219 86.3
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 8.1e-111 404.4 314 65.9
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.8e-110 403.3 220 85.5
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 2.4e-110 402.9 313 66.1
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.0e-110 402.1 220 85.5
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.2e-109 400.6 220 84.5
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.5e-109 400.2 220 85.0
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 2.6e-109 399.4 286 75.5
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 7.6e-109 397.9 219 85.4
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 4.9e-108 395.2 219 84.0
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 8.4e-108 394.4 219 82.6
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.1e-107 394.0 220 85.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.1e-107 394.0 284 69.4
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 9.3e-107 391.0 219 84.0
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 6.0e-106 388.3 320 64.1
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 7.8e-106 387.9 288 67.7
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.3e-105 387.1 314 64.3
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.7e-105 386.7 221 80.1
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.0e-105 386.0 292 66.1
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.9e-105 385.6 331 60.4
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 3.9e-105 385.6 287 66.6
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 6.6e-105 384.8 220 80.5
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.6e-105 384.8 304 63.8
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 8.7e-105 384.4 278 68.3
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 8.7e-105 384.4 219 80.8
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-104 384.0 305 63.0
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 1.1e-104 384.0 324 68.2
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 1.1e-104 384.0 286 68.2
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.5e-104 383.6 287 66.2
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.5e-104 382.9 220 80.0
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.6e-103 380.2 219 80.4
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.1e-102 377.5 219 79.9
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 2.4e-102 376.3 220 78.6
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.0e-101 373.2 219 79.5
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.3e-100 370.5 220 77.3
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.2e-100 369.8 276 67.4
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 6.4e-100 368.2 217 78.8
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 7.9e-98 361.3 205 83.4
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.5e-96 357.1 214 77.6
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.9e-96 356.7 332 68.1
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.4e-91 340.5 314 59.2
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 9.3e-91 337.8 306 59.5
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.0e-89 334.3 180 87.2
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.9e-88 330.1 219 69.4
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.9e-88 330.1 219 69.4
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.2e-85 320.9 217 67.7
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 5.8e-85 318.5 331 53.5
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 8.2e-79 298.1 222 67.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 5.3e-78 295.4 171 81.3
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.9e-78 295.0 247 66.8
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 2.0e-77 293.5 220 60.9
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.6e-77 293.1 475 41.1
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.2e-75 286.2 258 60.5
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 9.4e-75 284.6 319 52.7
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.1e-74 282.0 319 52.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.9e-72 276.9 220 60.5
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 4.3e-72 275.8 167 79.0
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 7.4e-72 275.0 220 65.0
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 7.9e-66 255.0 220 55.9
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.4e-62 244.2 144 80.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.3e-57 226.9 205 53.7
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.7e-57 225.3 220 57.3
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.8e-54 217.2 222 63.5
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-54 217.2 177 60.5
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 2.9e-52 209.9 211 65.4
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.9e-51 207.2 170 61.8
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 3.4e-40 169.9 97 80.4
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 2.8e-39 166.8 175 54.9
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.2e-37 161.4 124 64.5
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.0e-36 156.0 109 70.6
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-29 134.8 154 48.1
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.6e-29 134.4 175 36.6
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 9.5e-27 125.2 61 91.8
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 9.2e-22 108.6 104 56.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 3.5e-21 106.7 78 64.1
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.4e-14 84.0 43 90.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.5e-08 64.7 68 52.9
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.5e-08 64.7 68 52.9


User provided reference genes

Program Settings