Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001767 Lotus japonicus HOM05D005848 ORTHO05D038829 1.5e-98 362.8 182 100.0
Lj6g0011150 Lotus japonicus HOM05D000370 ORTHO05D001366 9.3e-16 87.8 43 90.7
Ca_13375_v3 Cicer arietinum L. HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
Eucgr.F01897 Eucalyptus grandis HOM05D005848 ORTHO05D007532 1.3e-14 84.0 44 84.1
FvH4_2g39810 Fragaria vesca HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
FAN15G3081 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
FAN20G0176 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
FAN20G3094 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
FAN27G0156 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
Lj5g0008078 Lotus japonicus HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
Lalb_Chr14g0369301 Lupinus albus HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
Medtr1g022235 Medicago truncatula HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
Os03g0775300 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 1.3e-14 84.0 44 84.1
Psat6g008800 Pisum sativum HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
Prupe.1G379500 Prunus persica HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
TPR.G20173 Trifolium pratense HOM05D005848 ORTHO05D007532 1.3e-14 84.0 42 88.1
TWI56G0568 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 1.3e-14 84.0 44 84.1
Zm00001eb059170 Zea mays HOM05D005848 ORTHO05D007532 1.3e-14 84.0 44 84.1
Atru.chr13.482 Acer truncatum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Aa31LG4G5410 Aethionema arabicum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
ATR0733G119 Amborella trichopoda HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Aqoxy6G01108 Aquilegia oxysepala HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
AL2G35110 Arabidopsis lyrata HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
AT1G75200 Arabidopsis thaliana HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
arahy.Tifrunner.gnm1.ann1.K656SJ Arachis hypogaea HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
arahy.Tifrunner.gnm1.ann1.R41T5G Arachis hypogaea HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
arahy.Tifrunner.gnm1.ann1.U1EDB6 Arachis hypogaea HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
MSTRG.1277 Avicennia marina HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
BcaB02g07015 Brassica carinata HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
A07p28980 Brassica napus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
A07p40790 Brassica napus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
C06p32750 Brassica napus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
C06p49180 Brassica napus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
BolC6t38398H Brassica oleracea HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
BolC6t39951H Brassica oleracea HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
BraA07t30539Z Brassica rapa HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
BraA07t31621Z Brassica rapa HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
CANSAT35G0174 Cannabis sativa HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Carub.0002s2201 Capsella rubella HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
CARHR068530 Cardamine hirsuta HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Cpa.g.sc36.76 Carica papaya HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Cfa018151 Carpinus fangiana HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
CiPaw.16G056600 Carya illinoinensis HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
ClCG08G015110 Citrullus lanatus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Ciclev10003946m.g Citrus clementina HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
COL.COLO4_26317 Corchorus olitorius HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Haze_17969 Corylus avellana HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
MELO3C010940.2 Cucumis melo HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
CsaV3_2G028680 Cucumis sativus L. HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
DCAR_020974 Daucus carota HOM05D005848 ORTHO05D007532 2.3e-14 83.2 42 85.7
Duzib116G0609 Durio zibethinus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
ECA247G2683 Erigeron canadensis HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Migut.C00727 Erythranthe guttata HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Thhalv10018304m.g Eutrema salsugineum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Gohir.A01G115800 Gossypium hirsutum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Gohir.D01G104100 Gossypium hirsutum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Gorai.002G128000 Gossypium raimondii HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
HanXRQChr02g0042111 Helianthus annuus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Lsat_1_v5_gn_1_17721 Lactuca sativa HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Lj4A40T46 Lonicera japonica HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
MD08G1031900 Malus domestica HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
MD15G1027800 Malus domestica HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Manes.18G027000 Manihot esculenta HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Nn1g04993 Nelumbo nucifera HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Nitab4.5_0005373g0030 Nicotiana tabacum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 42 85.7
Nitab4.5_0006280g0010 Nicotiana tabacum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 42 85.7
Oeu049954.1 Olea europaea HOM05D005848 ORTHO05D007532 2.3e-14 83.2 42 85.7
Peaxi162Scf00417g01212 Petunia axillaris HOM05D005848 ORTHO05D007532 2.3e-14 83.2 42 85.7
Potri.002G260700 Populus trichocarpa HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
PGR031G0193 Punica granatum HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
QL02p008596 Quercus lobata HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
RcHm_v2.0_Chr6g0301031 Rosa chinensis HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Sabra02G0198400 Salix brachista HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Sp5g30360 Schrenkiella parvula HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Sed0003570 Sechium edule HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Hund17082 Selenicereus undatus HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
THA.LOC104809061 Tarenaya hassleriana HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
Thecc.08G026700 Theobroma cacao HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
TWI36G0400 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
TAR381G1506 Trochodendron aralioides HOM05D005848 ORTHO05D007532 2.3e-14 83.2 44 81.8
HPP92_012274 Vanilla planifolia HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
GSVIVG01009707001 Vitis vinifera HOM05D005848 ORTHO05D007532 2.3e-14 83.2 39 92.3
SalBow7G2715 Salvia bowleyana HOM05D005848 ORTHO05D007532 3.0e-14 82.8 39 89.7
SGA_v2.0_scaffold54G19521 Striga asiatica HOM05D005848 ORTHO05D007532 3.0e-14 82.8 39 89.7
VMungo0647G1182 Vigna mungo HOM05D005848 ORTHO05D007532 3.0e-14 82.8 42 85.7
Actinidia15328 Actinidia chinensis HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
Actinidia22546 Actinidia chinensis HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
Ah.05g173260 Amaranthus hybridus HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
AagrBONN_evm.TU.Sc2ySwM_362.2225 Anthoceros agrestis HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 87.2
EL10Ac1g00774 Beta vulgaris HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
CSS0006033 Camellia sinensis var. sinensis HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
CDE01G0181 Ceratophyllum demersum HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
Dinv36081 Davidia involucrata HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
MBI16_g31221_MAGBIO Magnolia biondii HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
Sc02g0006150 Simmondsia chinensis HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
Sopen04g033930 Solanum pennellii HOM05D005848 ORTHO05D007532 3.9e-14 82.4 39 89.7
Cc10_g02880 Coffea canephora HOM05D005848 ORTHO05D007532 5.1e-14 82.0 39 87.2
PSO541G0294 Papaver somniferum HOM05D005848 ORTHO05D007532 5.1e-14 82.0 39 89.7
PSO675G8513 Papaver somniferum HOM05D005848 ORTHO05D007532 5.1e-14 82.0 39 89.7
Phvul.001G014532 Phaseolus vulgaris HOM05D005848 ORTHO05D007532 5.1e-14 82.0 39 89.7
Mapoly0010s0191 Marchantia polymorpha HOM05D005848 ORTHO05D007532 6.7e-14 81.6 39 87.2
Pp3c8_14160 Physcomitrium patens HOM05D005848 ORTHO05D007532 6.7e-14 81.6 39 87.2
CAN.G1226.12 Capsicum annuum HOM05D005848 ORTHO05D007532 8.7e-14 81.3 39 87.2
Glyma.14G075000 Glycine max HOM05D005848 ORTHO05D007532 8.7e-14 81.3 39 87.2
Glyma.17G250400 Glycine max HOM05D005848 ORTHO05D007532 8.7e-14 81.3 39 87.2
Rhsim07G0239300 Rhododendron simsii HOM05D005848 ORTHO05D007532 8.7e-14 81.3 39 87.2
Solyc04g080340.3 Solanum lycopersicum HOM05D005848 ORTHO05D007532 8.7e-14 81.3 39 87.2
PGSC0003DMG400004542 Solanum tuberosum HOM05D005848 ORTHO05D007532 8.7e-14 81.3 39 87.2
vmacro11198 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 8.7e-14 81.3 39 87.2
AUR62013733 Chenopodium quinoa HOM05D005848 ORTHO05D007532 1.1e-13 80.9 42 81.0
SMO119G0034 Selaginella moellendorffii HOM05D005848 ORTHO05D007532 1.1e-13 80.9 39 84.6
MCO11G535 Micromonas commoda HOM05D005848 ORTHO05D007532 1.5e-13 80.5 39 84.6
vmacro04526 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 1.9e-13 80.1 39 84.6
vmacro04525 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 2.5e-13 79.7 39 84.6
Cre14.g623300 Chlamydomonas reinhardtii HOM05D005848 ORTHO05D007532 4.3e-13 79.0 39 84.6
Sed0016731 Sechium edule HOM05D005848 ORTHO05D007532 7.4e-13 78.2 48 75.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 2.8e-12 76.3 39 76.9
Cfa025522 Carpinus fangiana HOM05D005848 ORTHO05D007532 1.2e-10 70.9 39 76.9
arahy.Tifrunner.gnm1.ann1.T0WXUF Arachis hypogaea HOM05D005848 ORTHO05D038829 1.5e-10 70.5 43 74.4


User provided reference genes

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