Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1084T4 Lonicera japonica HOM05D007080 ORTHO05D048338 3.0e-64 248.4 131 100.0
Hma1.2p1_1246F.1_g270120 Hydrangea macrophylla HOM05D007080 ORTHO05D048338 1.5e-15 86.7 124 48.4
Dinv36121 Davidia involucrata HOM05D007080 ORTHO05D008990 1.8e-13 79.7 123 45.5
PGR142G4038 Punica granatum HOM05D007080 ORTHO05D008990 3.1e-13 79.0 63 63.5
TAR623G1372 Trochodendron aralioides HOM05D007080 ORTHO05D008990 4.1e-13 78.6 120 51.7
Glyma.19G126700 Glycine max HOM05D007080 ORTHO05D008990 5.3e-13 78.2 90 54.4
CSS0023915 Camellia sinensis var. sinensis HOM05D007080 ORTHO05D008990 6.9e-13 77.8 118 50.0
CSS0031106 Camellia sinensis var. sinensis HOM05D007080 ORTHO05D008990 9.0e-13 77.4 118 50.8
Glyma.03G123100 Glycine max HOM05D007080 ORTHO05D008990 1.2e-12 77.0 90 52.2
Lj1g0027963 Lotus japonicus HOM05D007080 ORTHO05D008990 1.2e-12 77.0 74 59.5
Prupe.4G213200 Prunus persica HOM05D007080 ORTHO05D008990 1.2e-12 77.0 79 58.2
AUR62018386 Chenopodium quinoa HOM05D007080 ORTHO05D008990 2.6e-12 75.9 120 47.5
Lalb_Chr14g0365571 Lupinus albus HOM05D007080 ORTHO05D008990 3.4e-12 75.5 120 45.0
RhsimUnG0018800 Rhododendron simsii HOM05D007080 ORTHO05D008990 3.4e-12 75.5 127 45.7
PGSC0003DMG400026121 Solanum tuberosum HOM05D007080 ORTHO05D008990 7.6e-12 74.3 87 50.6
Sabra06G0022700 Salix brachista HOM05D007080 ORTHO05D008990 1.0e-11 73.9 91 52.7
Nitab4.5_0003160g0050 Nicotiana tabacum HOM05D007080 ORTHO05D008990 1.3e-11 73.6 63 61.9
Cpa.g.sc52.82 Carica papaya HOM05D007080 ORTHO05D008990 1.7e-11 73.2 120 45.8
Nitab4.5_0006059g0030 Nicotiana tabacum HOM05D007080 ORTHO05D008990 1.7e-11 73.2 61 62.3
VMungo1383G2155 Vigna mungo HOM05D007080 ORTHO05D008990 1.7e-11 73.2 90 52.2
MD03G1200900 Malus domestica HOM05D007080 ORTHO05D008990 2.9e-11 72.4 103 49.5
vmacro07766 Vaccinium macrocarpon HOM05D007080 ORTHO05D008990 2.9e-11 72.4 120 44.2
CAN.G199.26 Capsicum annuum HOM05D007080 ORTHO05D008990 3.8e-11 72.0 108 42.6
RhsimUnG0209400 Rhododendron simsii HOM05D007080 ORTHO05D008990 3.8e-11 72.0 122 44.3
Hund24550 Selenicereus undatus HOM05D007080 ORTHO05D008990 5.0e-11 71.6 132 41.7
EL10Ac3g07276 Beta vulgaris HOM05D007080 ORTHO05D008990 6.5e-11 71.2 102 47.1
Cfa017504 Carpinus fangiana HOM05D007080 ORTHO05D008990 6.5e-11 71.2 90 50.0
Solyc06g065490.3 Solanum lycopersicum HOM05D007080 ORTHO05D008990 6.5e-11 71.2 87 48.3
Eucgr.K01671 Eucalyptus grandis HOM05D007080 ORTHO05D008990 1.1e-10 70.5 95 48.4
Peaxi162Scf00076g00226 Petunia axillaris HOM05D007080 ORTHO05D008990 1.1e-10 70.5 121 43.0
Ca_08357_v3 Cicer arietinum L. HOM05D007080 ORTHO05D008990 1.4e-10 70.1 102 44.1
MELO3C005006.2 Cucumis melo HOM05D007080 ORTHO05D008990 1.4e-10 70.1 62 62.9
Sopen06g023980 Solanum pennellii HOM05D007080 ORTHO05D008990 1.4e-10 70.1 87 48.3
Phvul.001G119100 Phaseolus vulgaris HOM05D007080 ORTHO05D008990 2.5e-10 69.3 106 46.2
SalBow1G6984 Salvia bowleyana HOM05D007080 ORTHO05D008990 2.5e-10 69.3 90 50.0
GSVIVG01025792001 Vitis vinifera HOM05D007080 ORTHO05D008990 2.5e-10 69.3 120 47.5
CANSAT54G2774 Cannabis sativa HOM05D007080 ORTHO05D008990 3.2e-10 68.9 63 61.9
COL.COLO4_19390 Corchorus olitorius HOM05D007080 ORTHO05D008990 3.2e-10 68.9 53 62.3
Medtr7g088880 Medicago truncatula HOM05D007080 ORTHO05D008990 3.2e-10 68.9 93 50.5
SGA_v2.0_scaffold240G44138 Striga asiatica HOM05D007080 ORTHO05D008990 4.2e-10 68.6 65 61.5
ECA248G2633 Erigeron canadensis HOM05D007080 ORTHO05D008990 7.2e-10 67.8 124 45.2
QL07p012688 Quercus lobata HOM05D007080 ORTHO05D008990 7.2e-10 67.8 122 42.6
Atru.chr1.1289 Acer truncatum HOM05D007080 ORTHO05D008990 9.3e-10 67.4 96 45.8
CiPaw.10G043000 Carya illinoinensis HOM05D007080 ORTHO05D008990 9.3e-10 67.4 60 60.0
MSTRG.26172 Avicennia marina HOM05D007080 ORTHO05D008990 1.2e-09 67.0 88 50.0
ClCG03G002390 Citrullus lanatus HOM05D007080 ORTHO05D008990 1.6e-09 66.6 62 61.3
Gohir.D13G111900 Gossypium hirsutum HOM05D007080 ORTHO05D008990 1.6e-09 66.6 62 59.7
Cc06_g20190 Coffea canephora HOM05D007080 ORTHO05D008990 2.1e-09 66.2 120 44.2
Zm00001eb150500 Zea mays HOM05D007080 ORTHO05D008990 2.1e-09 66.2 63 52.4
Nn7g36949 Nelumbo nucifera HOM05D007080 ORTHO05D008990 2.7e-09 65.9 124 44.4
Psat0s1940g0160 Pisum sativum HOM05D007080 ORTHO05D008990 2.7e-09 65.9 120 42.5
Potri.006G034300 Populus trichocarpa HOM05D007080 ORTHO05D008990 2.7e-09 65.9 110 45.5
Sed0014766 Sechium edule HOM05D007080 ORTHO05D008990 2.7e-09 65.9 60 61.7
Thecc.05G122900 Theobroma cacao HOM05D007080 ORTHO05D008990 2.7e-09 65.9 125 44.8
FAN28G0517 Fragaria x ananassa HOM05D007080 ORTHO05D008990 4.6e-09 65.1 89 43.8
TPR.G22690 Trifolium pratense HOM05D007080 ORTHO05D008990 4.6e-09 65.1 121 45.5
QL07p012806 Quercus lobata HOM05D007080 ORTHO05D008990 6.1e-09 64.7 122 43.4
Ciclev10012378m.g Citrus clementina HOM05D007080 ORTHO05D008990 1.0e-08 63.9 120 40.8
Haze_11136 Corylus avellana HOM05D007080 ORTHO05D008990 1.0e-08 63.9 107 43.9
CsaV3_1G013070 Cucumis sativus L. HOM05D007080 ORTHO05D008990 1.0e-08 63.9 62 59.7
FAN19G3092 Fragaria x ananassa HOM05D007080 ORTHO05D008990 1.0e-08 63.9 88 43.2
THA.LOC104801692 Tarenaya hassleriana HOM05D007080 ORTHO05D008990 1.0e-08 63.9 66 54.5
Aqoxy1G00077 Aquilegia oxysepala HOM05D007080 ORTHO05D008990 1.3e-08 63.5 90 46.7
arahy.Tifrunner.gnm1.ann1.A7U9PP Arachis hypogaea HOM05D007080 ORTHO05D008990 1.3e-08 63.5 103 47.6
Manes.09G000200 Manihot esculenta HOM05D007080 ORTHO05D008990 1.3e-08 63.5 120 44.2
TWI74G1494 Tripterygium wilfordii HOM05D007080 ORTHO05D008990 1.8e-08 63.2 121 43.0
Migut.K00153 Erythranthe guttata HOM05D007080 ORTHO05D008990 2.3e-08 62.8 114 45.6
CDE08G0245 Ceratophyllum demersum HOM05D007080 ORTHO05D008990 3.0e-08 62.4 60 56.7
FAN26G2541 Fragaria x ananassa HOM05D007080 ORTHO05D008990 3.0e-08 62.4 71 47.9
AUR62030277 Chenopodium quinoa HOM05D007080 ORTHO05D008990 3.9e-08 62.0 47 66.0
arahy.Tifrunner.gnm1.ann1.10W9XD Arachis hypogaea HOM05D007080 ORTHO05D008990 5.1e-08 61.6 103 46.6
AL5G38020 Arabidopsis lyrata HOM05D007080 ORTHO05D008990 8.7e-08 60.8 38 76.3
Duzib106G1879 Durio zibethinus HOM05D007080 ORTHO05D008990 8.7e-08 60.8 122 41.0
FvH4_1g28660 Fragaria vesca HOM05D007080 ORTHO05D008990 8.7e-08 60.8 88 42.0
Ah.04g150700 Amaranthus hybridus HOM05D007080 ORTHO05D008990 1.1e-07 60.5 92 41.3
Thhalv10006177m.g Eutrema salsugineum HOM05D007080 ORTHO05D008990 1.1e-07 60.5 38 76.3
Gorai.013G125600 Gossypium raimondii HOM05D007080 ORTHO05D008990 1.1e-07 60.5 121 42.1
RcHm_v2.0_Chr3g0492661 Rosa chinensis HOM05D007080 ORTHO05D008990 1.5e-07 60.1 67 49.3
unitig_746.g26555 Utricularia gibba HOM05D007080 ORTHO05D008990 1.5e-07 60.1 98 41.8
Gohir.A13G109100 Gossypium hirsutum HOM05D007080 ORTHO05D008990 2.5e-07 59.3 120 43.3
AT3G56650 Arabidopsis thaliana HOM05D007080 ORTHO05D008990 5.7e-07 58.2 38 73.7
Carub.0005s2340 Capsella rubella HOM05D007080 ORTHO05D008990 7.4e-07 57.8 122 38.5
Actinidia17969 Actinidia chinensis HOM05D007080 ORTHO05D008990 9.7e-07 57.4 121 37.2
BcaB02g08359 Brassica carinata HOM05D007080 ORTHO05D008990 1.3e-06 57.0 63 54.0
Mapoly0008s0145 Marchantia polymorpha HOM05D007080 ORTHO05D008990 1.6e-06 56.6 64 45.3
A04p03450 Brassica napus HOM05D007080 ORTHO05D008990 2.2e-06 56.2 90 43.3
BraA04t16092Z Brassica rapa HOM05D007080 ORTHO05D008990 2.2e-06 56.2 90 43.3
BcaC02g09857 Brassica carinata HOM05D007080 ORTHO05D008990 4.8e-06 55.1 55 56.4
C04p35850 Brassica napus HOM05D007080 ORTHO05D008990 4.8e-06 55.1 55 56.4
BolC4t25215H Brassica oleracea HOM05D007080 ORTHO05D008990 4.8e-06 55.1 55 56.4


User provided reference genes

Program Settings