Gene: AT3G56650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G56650
  • Transcript Identifier AT3G56650.1
  • Gene Type Coding gene
  • Location Chr3 : 20984807-20985913 : positive

Gene Family Information

  • ID HOM05D007080
  • #Genes/#Species 113/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G56650.1
  • symbol PPD6
  • full_name PsbP-domain protein 6
  • uniprot Q9LXX5

Descriptions

  • Description thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
  • Computational description Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (TAIR:AT1G77090.1); Has 131 Blast hits to 131 proteins in 35 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015979
IEA
Gene Ontologyphotosynthesis
GO:0015979
IEA
InterProphotosynthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005509
IEA
Gene Ontologycalcium ion binding
GO:0005509
IEA
InterProcalcium ion binding
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma2
GO:0019898
IEA
Gene Ontologyextrinsic component of membrane
GO:0019898
IEA
InterProextrinsic component of membrane
GO:0009654
IEA
Gene Ontologyphotosystem II oxygen evolving complex
GO:0009654
IEA
InterProphotosystem II oxygen evolving complex
GO:0009523
IEA
GOA Databasephotosystem II
GO:0009523
IEA
InterProphotosystem II
GO:0009579
IDA
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid3
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast4
GO:0009536
IEA
GOA Databaseplastid
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid5
GO:0031977
IDA
GOA Databasethylakoid lumen
GO:0031977
HDA
Gene Ontologythylakoid lumen6
GO:0009543
IEA
GOA Databasechloroplast thylakoid lumen
GO:0009543
HDA
Gene Ontologychloroplast thylakoid lumen6
GO:0005829
HDA
Gene Ontologycytosol7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich
IPR002683 PsbP, C-terminal
Mapman id Description
35.1 not assigned.annotated