Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.9e-205 718.4 373 100.0
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 9.6e-169 597.0 377 82.5
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.3e-165 586.6 383 82.8
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.2e-165 585.9 381 81.9
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 2.1e-163 579.3 383 81.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.8e-162 576.2 376 80.1
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.5e-161 573.2 375 79.2
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.3e-160 570.1 358 83.5
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.7e-160 568.5 367 81.5
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 3.7e-160 568.5 377 79.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 4.1e-159 565.1 369 80.2
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 4.5e-158 561.6 377 80.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 7.7e-158 560.8 384 77.3
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.2e-157 559.3 348 84.8
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.9e-157 558.9 379 78.4
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.8e-157 558.5 375 77.6
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.8e-157 558.5 375 77.6
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 6.5e-157 557.8 385 78.7
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.5e-156 554.7 355 81.7
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 9.4e-156 553.9 349 82.5
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.2e-155 553.5 383 77.5
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.2e-155 553.5 346 82.9
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.7e-155 552.4 376 78.5
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.6e-155 552.0 340 85.3
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.1e-155 551.2 351 81.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 7.9e-155 550.8 357 79.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 7.9e-155 550.8 327 86.9
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.0e-154 550.4 376 76.3
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.0e-154 550.4 357 81.2
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-154 550.1 358 80.2
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.8e-154 549.7 357 79.6
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.3e-154 549.3 386 75.9
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.0e-154 548.9 364 79.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.9e-154 548.5 370 78.6
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.1e-154 548.1 355 80.6
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 8.8e-154 547.4 358 81.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 8.8e-154 547.4 349 81.4
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 8.8e-154 547.4 360 79.7
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 8.8e-154 547.4 357 79.6
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.1e-153 547.0 349 81.4
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.5e-153 546.6 379 77.3
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 4.4e-153 545.0 354 80.5
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 9.7e-153 543.9 329 85.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.3e-152 543.5 357 78.4
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.3e-152 543.5 343 81.9
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.2e-152 542.7 345 80.9
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 4.8e-152 541.6 379 76.8
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 4.8e-152 541.6 372 76.9
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 4.8e-152 541.6 374 77.8
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.8e-152 541.6 353 80.5
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 4.8e-152 541.6 354 78.8
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 6.3e-152 541.2 371 76.0
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 8.2e-152 540.8 376 75.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.4e-151 540.0 374 75.4
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.8e-151 539.7 354 79.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.8e-151 539.7 369 77.0
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.8e-151 539.7 366 79.2
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.4e-151 539.3 369 78.3
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.4e-151 539.3 381 76.1
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 3.1e-151 538.9 375 75.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 4.1e-151 538.5 400 73.2
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 4.1e-151 538.5 351 80.6
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 9.1e-151 537.3 344 82.0
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-150 537.0 379 76.5
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.2e-150 537.0 466 64.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.5e-150 536.6 369 76.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.6e-150 535.8 335 81.5
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 3.4e-150 535.4 378 75.7
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 3.4e-150 535.4 371 77.4
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.5e-150 535.0 377 75.9
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 4.5e-150 535.0 313 86.9
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 5.9e-150 534.6 354 78.2
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 7.7e-150 534.3 374 75.4
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.0e-149 533.9 378 75.4
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.3e-149 533.5 350 78.6
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.7e-149 533.1 342 81.3
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.7e-149 533.1 323 83.9
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.2e-149 532.7 368 76.4
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.9e-149 532.3 378 74.9
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 6.5e-149 531.2 350 78.3
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.1e-148 530.4 323 83.9
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.4e-148 530.0 353 77.6
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.5e-148 529.3 354 77.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-148 528.9 358 76.8
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.2e-148 527.7 321 84.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 7.2e-148 527.7 392 71.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 9.4e-148 527.3 358 77.1
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 9.4e-148 527.3 358 77.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.2e-147 526.9 358 76.5
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.6e-147 526.6 378 74.3
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.1e-147 526.2 381 74.3
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.1e-147 526.2 327 82.9
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.6e-147 525.4 351 77.8
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 7.9e-147 524.2 376 74.2
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.0e-146 523.9 323 82.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.0e-146 523.9 325 82.2
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.0e-146 523.9 350 77.7
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-146 523.5 350 78.0
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-146 523.5 375 74.1
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.4e-146 523.5 350 78.0
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.8e-146 523.1 353 77.6
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.3e-146 522.7 357 77.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.0e-146 522.3 360 77.2
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 5.2e-146 521.5 376 73.9
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.7e-146 521.2 351 77.5
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.1e-145 520.4 349 77.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.5e-145 520.0 322 82.9
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.6e-145 519.2 376 73.9
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.6e-145 519.2 323 81.4
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.6e-145 519.2 376 73.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.6e-145 519.2 404 69.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 3.3e-145 518.8 329 79.0
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 9.7e-145 517.3 330 79.7
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.7e-145 517.3 330 79.7
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 2.8e-144 515.8 349 76.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.8e-144 515.8 349 76.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.8e-143 513.1 349 75.1
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 2.4e-143 512.7 378 73.0
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 5.3e-143 511.5 457 63.9
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 9.1e-143 510.8 354 74.0
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-142 510.0 322 80.4
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 5.9e-142 508.1 346 77.2
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.7e-141 506.5 370 71.6
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.2e-141 506.1 286 88.8
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 2.2e-141 506.1 342 76.3
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 3.8e-141 505.4 322 80.1
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 5.0e-141 505.0 370 71.4
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.1e-140 503.8 379 72.0
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.5e-140 502.7 286 88.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-140 501.9 325 78.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-140 501.9 325 78.8
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.2e-139 500.4 325 78.5
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.1e-139 499.6 322 80.1
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.0e-138 495.7 300 82.3
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.4e-135 486.1 332 74.7
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.6e-134 483.4 326 74.2
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.0e-134 483.0 358 71.5
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.2e-132 474.6 318 75.8
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 3.6e-131 472.2 358 68.4
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.7e-131 471.9 330 77.6
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.0e-130 470.7 317 74.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.3e-130 469.5 376 68.6
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.8e-130 467.6 317 74.4
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 8.3e-128 461.1 301 75.4
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.4e-127 459.5 325 71.1
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 7.0e-127 458.0 299 77.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 9.1e-127 457.6 347 69.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.4e-111 407.1 336 64.6
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.0e-109 401.0 250 82.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 8.6e-109 397.9 315 65.4
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 7.3e-108 394.8 259 81.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 8.9e-98 361.3 257 75.9
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.0e-97 360.1 290 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 3.6e-91 339.3 253 71.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.8e-75 285.8 297 56.9
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.1e-70 270.4 209 71.3
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 6.7e-69 265.4 309 50.2
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 9.6e-68 261.5 378 45.8
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 5.3e-66 255.8 188 72.9
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.2e-47 193.0 112 83.0
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.9e-45 186.4 113 83.2
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 6.5e-40 169.1 181 57.5
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 6.5e-40 169.1 181 57.5
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 4.7e-38 162.9 168 59.5
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 7.0e-34 149.1 104 70.2
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.5e-33 147.9 326 33.4
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.4e-33 146.7 102 71.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.4e-33 146.7 102 71.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.2e-32 144.1 102 70.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.8e-32 143.3 98 71.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.9e-31 141.0 106 67.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 6.1e-30 136.0 107 62.6
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 8.8e-29 132.1 106 62.3
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.3e-19 101.7 64 75.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.7e-17 94.0 102 53.9
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.7e-17 94.0 67 74.6
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.1e-14 82.8 61 73.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 5.0e-08 63.2 38 73.7
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.5e-07 59.7 38 71.1


User provided reference genes

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