Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A26T29 Lonicera japonica HOM05D001999 ORTHO05D001994 6.5e-162 573.9 277 100.0
Dinv33049 Davidia involucrata HOM05D001999 ORTHO05D001994 7.4e-81 304.7 261 60.2
GSVIVG01028007001 Vitis vinifera HOM05D001999 ORTHO05D001994 5.1e-66 255.4 259 54.4
Atru.chr5.1156 Acer truncatum HOM05D001999 ORTHO05D001994 1.6e-64 250.4 261 52.5
DCAR_002825 Daucus carota HOM05D001999 ORTHO05D001994 2.8e-64 249.6 258 51.9
CSS0032431 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 3.7e-64 249.2 259 53.7
QL12p027615 Quercus lobata HOM05D001999 ORTHO05D001994 4.8e-64 248.8 263 51.7
Rhsim13G0010900 Rhododendron simsii HOM05D001999 ORTHO05D001994 1.8e-58 230.3 255 51.8
Nn3g21468 Nelumbo nucifera HOM05D001999 ORTHO05D001994 3.7e-56 222.6 261 49.4
vmacro02456 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 2.4e-55 219.9 255 49.4
COL.COLO4_23356 Corchorus olitorius HOM05D001999 ORTHO05D001994 2.0e-54 216.9 266 47.4
Hma1.2p1_0209F.1_g088440 Hydrangea macrophylla HOM05D001999 ORTHO05D001994 3.4e-54 216.1 262 46.6
CiPaw.07G107800 Carya illinoinensis HOM05D001999 ORTHO05D001994 4.5e-54 215.7 261 47.9
Nn4g25807 Nelumbo nucifera HOM05D001999 ORTHO05D001994 2.9e-53 213.0 263 48.3
Thecc.01G299000 Theobroma cacao HOM05D001999 ORTHO05D001994 6.5e-53 211.8 262 46.6
Haze_04925 Corylus avellana HOM05D001999 ORTHO05D001994 1.4e-52 210.7 263 48.3
Haze_04921 Corylus avellana HOM05D001999 ORTHO05D001994 5.5e-52 208.8 263 47.9
Duzib138G0033 Durio zibethinus HOM05D001999 ORTHO05D001994 5.5e-52 208.8 260 46.9
TAR633G2461 Trochodendron aralioides HOM05D001999 ORTHO05D001994 5.5e-52 208.8 265 46.8
Actinidia24828 Actinidia chinensis HOM05D001999 ORTHO05D001994 1.2e-51 207.6 257 46.3
Duzib133G0338 Durio zibethinus HOM05D001999 ORTHO05D001994 2.1e-51 206.8 253 46.2
Duzib211G0185 Durio zibethinus HOM05D001999 ORTHO05D001994 3.6e-51 206.1 264 46.2
Rhsim01G0284400 Rhododendron simsii HOM05D001999 ORTHO05D001994 3.0e-50 203.0 268 46.3
TAR636G1732 Trochodendron aralioides HOM05D001999 ORTHO05D001994 5.1e-50 202.2 266 47.4
vmacro15001 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 2.6e-49 199.9 257 46.7
Ciclev10020382m.g Citrus clementina HOM05D001999 ORTHO05D001994 5.7e-49 198.7 257 44.4
TAR365G1043 Trochodendron aralioides HOM05D001999 ORTHO05D001994 5.7e-49 198.7 261 47.5
Gorai.004G142300 Gossypium raimondii HOM05D001999 ORTHO05D001994 6.3e-48 195.3 262 43.9
CANSAT25G1967 Cannabis sativa HOM05D001999 ORTHO05D001994 4.5e-46 189.1 262 45.0
FAN09G2669 Fragaria x ananassa HOM05D001999 ORTHO05D001994 4.5e-46 189.1 261 43.3
FvH4_6g06620 Fragaria vesca HOM05D001999 ORTHO05D001994 5.9e-46 188.7 261 43.3
CANSAT25G3193 Cannabis sativa HOM05D001999 ORTHO05D001994 1.3e-45 187.6 262 44.7
FAN02G3011 Fragaria x ananassa HOM05D001999 ORTHO05D001994 1.7e-45 187.2 261 43.3
FAN14G1734 Fragaria x ananassa HOM05D001999 ORTHO05D001994 1.7e-45 187.2 261 42.9
FAN05G1277 Fragaria x ananassa HOM05D001999 ORTHO05D001994 2.2e-45 186.8 261 43.3
MD04G1199600 Malus domestica HOM05D001999 ORTHO05D001994 2.9e-45 186.4 263 43.7
Prupe.6G320100 Prunus persica HOM05D001999 ORTHO05D001994 6.5e-45 185.3 263 44.1
RcHm_v2.0_Chr3g0455821 Rosa chinensis HOM05D001999 ORTHO05D001994 8.5e-45 184.9 261 42.9
Aqoxy2G02961 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 2.5e-44 183.3 265 44.9
MD12G1212400 Malus domestica HOM05D001999 ORTHO05D001994 3.2e-44 183.0 263 43.7
Dinv40334 Davidia involucrata HOM05D001999 ORTHO05D001994 1.2e-43 181.0 260 43.5
Thecc.05G313600 Theobroma cacao HOM05D001999 ORTHO05D001994 3.6e-43 179.5 264 42.8
Cfa006634 Carpinus fangiana HOM05D001999 ORTHO05D001994 1.8e-42 177.2 262 43.1
CSS0046081 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 1.5e-41 174.1 261 40.6
Dinv30819 Davidia involucrata HOM05D001999 ORTHO05D001994 2.6e-41 173.3 260 41.9
Ciclev10001227m.g Citrus clementina HOM05D001999 ORTHO05D001994 3.3e-41 172.9 270 42.6
Haze_04134 Corylus avellana HOM05D001999 ORTHO05D001994 9.7e-41 171.4 262 42.4
Cc02_g34200 Coffea canephora HOM05D001999 ORTHO05D001994 4.8e-40 169.1 260 41.2
Duzib177G1061 Durio zibethinus HOM05D001999 ORTHO05D001994 3.1e-39 166.4 262 40.8
Ca_10133_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 4.1e-39 166.0 261 40.6
CSS0039587 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 1.2e-38 164.5 262 39.3
CSS0018606 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 1.6e-38 164.1 262 39.3
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 2.0e-38 163.7 264 41.3
Glyma.10G151500 Glycine max HOM05D001999 ORTHO05D001994 2.0e-38 163.7 262 38.9
CiPaw.07G022200 Carya illinoinensis HOM05D001999 ORTHO05D001994 2.6e-38 163.3 262 41.6
Atru.chr2.75 Acer truncatum HOM05D001999 ORTHO05D001994 4.5e-38 162.5 263 39.9
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 5.9e-38 162.2 258 39.9
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 5.9e-38 162.2 259 41.3
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 5.9e-38 162.2 259 41.3
PSO170G6103 Papaver somniferum HOM05D001999 ORTHO05D001994 7.7e-38 161.8 267 40.4
PSO210G6703 Papaver somniferum HOM05D001999 ORTHO05D001994 7.7e-38 161.8 267 40.4
Sabra13G0013700 Salix brachista HOM05D001999 ORTHO05D001994 7.7e-38 161.8 263 41.4
Sabra13G0017800 Salix brachista HOM05D001999 ORTHO05D001994 7.7e-38 161.8 263 41.4
Aqoxy5G00748 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 2.2e-37 160.2 251 39.8
CiPaw.08G161600 Carya illinoinensis HOM05D001999 ORTHO05D001994 2.9e-37 159.8 261 39.8
Actinidia21498 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.8e-37 159.5 260 39.6
Potri.013G015600 Populus trichocarpa HOM05D001999 ORTHO05D001994 5.0e-37 159.1 264 40.2
Lj5g0002371 Lotus japonicus HOM05D001999 ORTHO05D001994 6.5e-37 158.7 262 39.7
Manes.09G170900 Manihot esculenta HOM05D001999 ORTHO05D001994 6.5e-37 158.7 261 42.5
Actinidia35557 Actinidia chinensis HOM05D001999 ORTHO05D001994 8.5e-37 158.3 264 39.4
Peaxi162Scf00037g01221 Petunia axillaris HOM05D001999 ORTHO05D001994 1.5e-36 157.5 260 39.2
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 1.5e-36 157.5 259 40.5
Potri.005G024700 Populus trichocarpa HOM05D001999 ORTHO05D001994 2.5e-36 156.8 260 40.8
TWI36G1062 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 3.2e-36 156.4 264 39.8
Phvul.007G197300 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 9.4e-36 154.8 262 38.2
Manes.08G117000 Manihot esculenta HOM05D001999 ORTHO05D001994 2.1e-35 153.7 261 40.2
Actinidia19777 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.6e-35 152.9 262 38.9
Psat0s1500g0040 Pisum sativum HOM05D001999 ORTHO05D001994 4.7e-35 152.5 263 39.2
Medtr1g083390 Medicago truncatula HOM05D001999 ORTHO05D001994 1.0e-34 151.4 265 40.8
Gohir.A13G109800 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.4e-34 151.0 265 36.6
Cpa.g.sc327.4 Carica papaya HOM05D001999 ORTHO05D001994 2.3e-34 150.2 261 40.2
CsaV3_1G038740 Cucumis sativus L. HOM05D001999 ORTHO05D001994 3.0e-34 149.8 261 38.3
QL03p020135 Quercus lobata HOM05D001999 ORTHO05D001994 3.0e-34 149.8 265 40.8
EL10Ac4g09908 Beta vulgaris HOM05D001999 ORTHO05D001994 6.7e-34 148.7 262 41.2
TPR.G17700 Trifolium pratense HOM05D001999 ORTHO05D001994 8.8e-34 148.3 267 40.1
AUR62000756 Chenopodium quinoa HOM05D001999 ORTHO05D001994 1.5e-33 147.5 262 39.7
Sc16g0008800 Simmondsia chinensis HOM05D001999 ORTHO05D001994 2.0e-33 147.1 263 40.7
GSVIVG01031134001 Vitis vinifera HOM05D001999 ORTHO05D001994 2.6e-33 146.7 229 41.9
ClCG03G017310 Citrullus lanatus HOM05D001999 ORTHO05D001994 4.4e-33 146.0 261 37.9
TWI56G0125 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 5.7e-33 145.6 264 37.9
Gohir.D13G112400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 9.7e-33 144.8 269 35.3
AUR62005212 Chenopodium quinoa HOM05D001999 ORTHO05D001994 2.8e-32 143.3 262 39.3
MBI19_g13195_MAGBIO Magnolia biondii HOM05D001999 ORTHO05D001994 2.8e-32 143.3 265 39.2
Sabra05G0030100 Salix brachista HOM05D001999 ORTHO05D001994 2.8e-32 143.3 257 40.5
Actinidia32221 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.7e-32 142.9 256 37.5
Rhsim05G0138600 Rhododendron simsii HOM05D001999 ORTHO05D001994 3.7e-32 142.9 263 38.0
PSO832G2288 Papaver somniferum HOM05D001999 ORTHO05D001994 4.8e-32 142.5 262 37.4
DCAR_003361 Daucus carota HOM05D001999 ORTHO05D001994 8.2e-32 141.7 261 37.5
Gorai.013G126200 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.1e-31 141.4 267 34.8
Peaxi162Scf00071g00544 Petunia axillaris HOM05D001999 ORTHO05D001994 1.1e-31 141.4 253 39.9
Nitab4.5_0003844g0010 Nicotiana tabacum HOM05D001999 ORTHO05D001994 1.8e-31 140.6 258 37.2
Oeu043739.1 Olea europaea HOM05D001999 ORTHO05D001994 2.4e-31 140.2 259 37.8
PSO210G5200 Papaver somniferum HOM05D001999 ORTHO05D001994 3.1e-31 139.8 263 36.9
Glyma.19G232800 Glycine max HOM05D001999 ORTHO05D001994 5.3e-31 139.0 262 37.0
vmacro19742 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 5.3e-31 139.0 265 37.0
PGR031G0021 Punica granatum HOM05D001999 ORTHO05D001994 7.0e-31 138.7 263 35.7
Gorai.013G205600 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.2e-30 137.9 263 38.4
Sed0027191 Sechium edule HOM05D001999 ORTHO05D001994 1.2e-30 137.9 260 36.9
CSS0044976 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 1.6e-30 137.5 200 41.0
Hund07102 Selenicereus undatus HOM05D001999 ORTHO05D001994 1.6e-30 137.5 260 39.2
PGR083G1363 Punica granatum HOM05D001999 ORTHO05D001994 2.7e-30 136.7 269 37.2
Gohir.D13G180200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 4.5e-30 136.0 263 38.0
Ah.04g161170 Amaranthus hybridus HOM05D001999 ORTHO05D001994 1.0e-29 134.8 260 39.2
Sed0011984 Sechium edule HOM05D001999 ORTHO05D001994 2.2e-29 133.7 261 36.4
Gohir.A13G174400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 8.5e-29 131.7 263 37.3
Glyma.20G236700 Glycine max HOM05D001999 ORTHO05D001994 1.1e-28 131.3 261 35.2
Lalb_Chr06g0167721 Lupinus albus HOM05D001999 ORTHO05D001994 1.9e-28 130.6 262 36.3
Lalb_Chr21g0310571 Lupinus albus HOM05D001999 ORTHO05D001994 3.2e-28 129.8 261 36.4
Glyma.03G235100 Glycine max HOM05D001999 ORTHO05D001994 4.2e-28 129.4 262 35.5
Actinidia24344 Actinidia chinensis HOM05D001999 ORTHO05D001994 7.2e-28 128.6 270 35.2
arahy.Tifrunner.gnm1.ann1.65M59H Arachis hypogaea HOM05D001999 ORTHO05D001994 7.2e-28 128.6 263 36.9
arahy.Tifrunner.gnm1.ann1.9XGC9Z Arachis hypogaea HOM05D001999 ORTHO05D001994 7.2e-28 128.6 263 36.9
arahy.Tifrunner.gnm1.ann1.J3YIB3 Arachis hypogaea HOM05D001999 ORTHO05D001994 1.2e-27 127.9 265 37.0
Lj1g0010414 Lotus japonicus HOM05D001999 ORTHO05D001994 1.6e-27 127.5 263 37.3
Lalb_Chr02g0148101 Lupinus albus HOM05D001999 ORTHO05D001994 1.6e-27 127.5 260 33.1
Lj5C391G14 Lonicera japonica HOM05D001999 ORTHO05D001994 2.1e-27 127.1 262 37.8
DCAR_022143 Daucus carota HOM05D001999 ORTHO05D001994 2.7e-27 126.7 276 34.8
Psat0s1830g0240 Pisum sativum HOM05D001999 ORTHO05D001994 2.7e-27 126.7 262 36.3
MSTRG.16390 Avicennia marina HOM05D001999 ORTHO05D001994 3.6e-27 126.3 259 37.1
arahy.Tifrunner.gnm1.ann1.AWF533 Arachis hypogaea HOM05D001999 ORTHO05D001994 6.1e-27 125.6 263 35.0
Duzib128G0926 Durio zibethinus HOM05D001999 ORTHO05D001994 8.0e-27 125.2 207 38.2
Phvul.006G089200 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 1.0e-26 124.8 263 35.7
TWI59G0139 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 2.3e-26 123.6 257 34.2
Eucgr.B01912 Eucalyptus grandis HOM05D001999 ORTHO05D001994 8.8e-26 121.7 265 35.8
TPR.G33183 Trifolium pratense HOM05D001999 ORTHO05D001994 8.8e-26 121.7 264 36.4
Ca_05796_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 2.0e-25 120.6 262 34.0
Lalb_Chr18g0045791 Lupinus albus HOM05D001999 ORTHO05D001994 4.4e-25 119.4 264 35.2
Oeu045901.1 Olea europaea HOM05D001999 ORTHO05D001994 7.5e-25 118.6 241 35.7
Lalb_Chr15g0077401 Lupinus albus HOM05D001999 ORTHO05D001994 2.8e-24 116.7 248 35.5
MSTRG.27977 Avicennia marina HOM05D001999 ORTHO05D001994 1.8e-23 114.0 262 36.6
VMungo0540G0393 Vigna mungo HOM05D001999 ORTHO05D001994 1.8e-23 114.0 263 33.5
CANSAT54G0146 Cannabis sativa HOM05D001999 ORTHO05D001994 2.4e-23 113.6 263 35.0
Lj9C146G5 Lonicera japonica HOM05D001999 ORTHO05D001994 5.4e-23 112.5 280 33.2
TWI23G1185 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 9.1e-23 111.7 220 33.6
Lj5C396G7 Lonicera japonica HOM05D001999 ORTHO05D001994 4.5e-22 109.4 216 38.9
Oeu010920.1 Olea europaea HOM05D001999 ORTHO05D001994 1.0e-21 108.2 227 36.1
SGA_v2.0_scaffold80G25894 Striga asiatica HOM05D001999 ORTHO05D001994 1.7e-21 107.5 260 34.2
SGA_v2.0_scaffold81G26096 Striga asiatica HOM05D001999 ORTHO05D001994 8.5e-21 105.1 261 36.0
Medtr7g112740 Medicago truncatula HOM05D001999 ORTHO05D001994 1.1e-20 104.8 258 32.2
MELO3C015298.2 Cucumis melo HOM05D001999 ORTHO05D001994 1.6e-19 100.9 127 46.5
Actinidia21053 Actinidia chinensis HOM05D001999 ORTHO05D001994 2.1e-19 100.5 216 35.2
TAR362G0861 Trochodendron aralioides HOM05D001999 ORTHO05D001994 6.1e-19 99.0 137 42.3
Rhsim10G0031900 Rhododendron simsii HOM05D001999 ORTHO05D001994 1.4e-18 97.8 112 51.8
Hund21714 Selenicereus undatus HOM05D001999 ORTHO05D001994 1.2e-17 94.7 265 32.8
Migut.N02088 Erythranthe guttata HOM05D001999 ORTHO05D001994 4.1e-15 86.3 189 37.6
Gohir.A08G117700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 4.1e-15 86.3 171 36.3
Gohir.D08G138700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 7.0e-15 85.5 171 36.8
HanXRQChr11g0339901 Helianthus annuus HOM05D001999 ORTHO05D001994 2.7e-14 83.6 253 35.2
Aa31LG1G29020 Aethionema arabicum HOM05D001999 ORTHO05D001994 4.5e-14 82.8 214 30.8
THA.LOC104817500 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 1.0e-13 81.6 252 32.9
Sc06g0004090 Simmondsia chinensis HOM05D001999 ORTHO05D001994 2.3e-13 80.5 123 43.1
unitig_52.g17384 Utricularia gibba HOM05D001999 ORTHO05D001994 2.3e-13 80.5 255 30.2
ECA236G0210 Erigeron canadensis HOM05D001999 ORTHO05D001994 2.9e-13 80.1 256 30.5
ECA236G3557 Erigeron canadensis HOM05D001999 ORTHO05D001994 5.0e-13 79.3 270 29.6
Os05g0154600 Oryza sativa ssp. japonica HOM05D001999 ORTHO05D001994 1.2e-11 74.7 268 29.1
HanXRQChr04g0118031 Helianthus annuus HOM05D001999 ORTHO05D001994 1.4e-10 71.2 204 32.4
Lsat_1_v5_gn_7_72040 Lactuca sativa HOM05D001999 ORTHO05D001994 7.5e-09 65.5 196 30.1
Lj5A395G43 Lonicera japonica HOM05D001999 ORTHO05D001994 2.9e-08 63.5 159 34.6
Oeu043342.1 Olea europaea HOM05D001999 ORTHO05D001994 3.7e-08 63.2 260 29.2
HanXRQChr05g0136211 Helianthus annuus HOM05D001999 ORTHO05D001994 6.4e-08 62.4 286 26.6
Rhsim10G0031700 Rhododendron simsii HOM05D001718 ORTHO05D001994 6.4e-08 62.4 119 41.2
SGA_v2.0_scaffold586G53057 Striga asiatica HOM05D001999 ORTHO05D001994 1.4e-07 61.2 128 35.2
DCAR_022670 Daucus carota HOM05D001999 ORTHO05D001994 1.8e-07 60.8 143 35.7
RhsimUnG0054400 Rhododendron simsii HOM05D001718 ORTHO05D001994 5.4e-07 59.3 70 54.3
Zm00001eb346030 Zea mays HOM05D001999 ORTHO05D001994 9.2e-07 58.5 265 27.9
unitig_0.g2317 Utricularia gibba HOM05D001999 ORTHO05D001994 2.0e-06 57.4 159 34.6


User provided reference genes

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