Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 8.3e-188 660.2 332 100.0
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 8.0e-167 590.5 332 88.9
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.9e-163 579.3 332 87.0
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 7.0e-163 577.4 332 87.0
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 5.0e-161 571.2 332 86.7
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 9.5e-160 567.0 332 84.6
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 8.1e-159 563.9 332 84.0
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.1e-158 563.5 332 85.2
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 4.0e-158 561.6 332 85.2
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 7.5e-157 557.4 332 85.2
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 7.5e-157 557.4 332 83.7
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.2e-154 550.1 333 82.6
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.1e-153 544.7 332 82.8
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.5e-149 533.1 332 82.5
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.3e-144 515.4 334 78.7
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 7.3e-144 514.2 333 77.8
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.8e-142 509.6 332 77.7
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 5.2e-142 508.1 330 78.2
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.2e-141 506.9 333 77.5
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 4.9e-140 501.5 333 76.3
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 6.4e-140 501.1 330 77.0
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-139 500.0 331 77.0
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 5.4e-139 498.0 334 77.2
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 1.2e-138 496.9 334 76.9
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 2.1e-138 496.1 338 75.7
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 4.6e-138 495.0 337 76.0
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.7e-137 493.0 331 76.1
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.3e-137 492.7 339 76.1
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.1e-137 491.5 331 75.5
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 5.1e-137 491.5 333 75.4
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 9.6e-136 487.3 354 72.3
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 9.6e-136 487.3 354 72.3
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 2.1e-135 486.1 330 75.5
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 4.8e-135 485.0 334 75.4
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 6.2e-135 484.6 333 75.4
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.4e-134 482.6 332 73.2
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.1e-134 482.3 333 76.3
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 5.3e-134 481.5 333 74.8
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 9.0e-134 480.7 334 74.3
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.2e-133 480.3 331 75.5
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.2e-133 480.3 335 75.5
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-133 479.9 335 74.6
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.6e-133 479.2 333 73.0
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 9.9e-133 477.2 333 73.6
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.7e-132 476.5 335 74.6
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.2e-132 476.1 335 74.6
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.2e-132 476.1 335 74.0
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.9e-132 474.9 318 76.1
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 4.9e-132 474.9 333 72.7
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 6.4e-132 474.6 338 73.7
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.4e-132 474.2 335 74.6
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.1e-131 473.8 324 74.1
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.1e-131 473.8 333 73.6
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.9e-131 473.0 334 72.8
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.4e-131 472.6 336 73.5
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.4e-131 472.6 335 74.0
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 9.3e-131 470.7 334 72.5
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.7e-130 469.2 331 73.7
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.6e-130 468.4 335 72.8
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.8e-129 466.5 334 71.6
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.3e-129 466.1 338 72.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 8.7e-129 464.2 336 72.0
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 4.3e-128 461.8 334 70.7
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 7.4e-128 461.1 339 70.2
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 7.4e-128 461.1 339 70.2
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 9.6e-128 460.7 339 71.7
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.3e-127 460.3 333 71.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.3e-127 460.3 341 68.9
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.6e-127 459.9 379 64.9
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 2.1e-127 459.5 341 71.6
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.8e-127 458.4 335 71.3
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 8.1e-127 457.6 338 68.6
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.4e-126 456.8 330 70.9
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 3.1e-126 455.7 333 70.9
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 3.1e-126 455.7 338 68.6
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.0e-126 455.3 333 68.8
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.5e-125 453.4 338 68.6
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.6e-125 452.6 338 68.3
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 4.5e-125 451.8 339 69.6
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 5.8e-125 451.4 338 68.0
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 7.6e-125 451.1 334 70.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 9.9e-125 450.7 330 69.1
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 4.9e-124 448.4 323 71.8
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.4e-124 448.0 330 70.0
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.4e-123 446.0 354 66.9
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 6.7e-121 438.0 334 69.8
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.4e-120 434.5 330 68.5
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.3e-119 433.7 347 68.9
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.8e-119 432.6 331 68.9
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 2.8e-119 432.6 334 67.1
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.8e-119 431.8 340 67.6
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.2e-119 431.4 333 67.9
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.1e-118 430.6 335 66.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.1e-118 430.6 328 69.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.1e-118 430.6 328 69.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.5e-117 426.8 338 69.8
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.0e-117 426.4 339 67.3
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.1e-115 420.6 340 66.8
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.1e-114 416.4 340 65.3
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 5.1e-113 411.8 339 64.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 3.3e-112 409.1 339 65.2
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.6e-111 406.8 358 64.5
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.4e-110 402.9 334 65.6
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.4e-107 393.7 361 62.9
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 2.5e-107 392.9 263 77.2
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.2e-103 379.8 337 61.7
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 8.2e-103 377.9 354 61.3
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.2e-101 374.0 352 59.7
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 5.9e-101 371.7 340 57.4
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.3e-100 370.5 284 70.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.1e-99 367.5 321 64.8
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.7e-98 362.8 343 58.3
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 6.1e-98 361.7 329 58.7
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 4.1e-94 349.0 355 57.7
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.5e-93 345.5 336 57.4
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 2.2e-87 326.6 321 57.3
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.5e-83 313.9 230 70.0
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.6e-80 303.1 254 64.6
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 2.4e-78 296.6 187 79.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.0e-76 291.2 245 65.7
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.8e-73 280.4 211 68.7
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 3.8e-68 262.7 267 59.2
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.5e-67 260.8 365 43.8
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 1.0e-65 254.6 189 69.8
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.0e-60 238.0 380 42.6
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.6e-58 230.7 353 43.9
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 5.2e-57 225.7 358 42.5
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.2e-53 214.5 216 54.6
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.6e-53 214.2 352 41.8
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 8.0e-50 201.8 356 39.9
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.6e-45 187.6 223 51.1
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 2.3e-44 183.7 173 51.4
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 7.3e-43 178.7 369 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.1e-34 150.6 350 35.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.8e-33 147.5 379 31.9
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-30 137.5 106 69.8
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.1e-27 128.3 147 51.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 9.0e-25 118.6 128 49.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.4e-24 116.7 86 62.8
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 7.6e-24 115.5 345 31.0
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-23 113.6 85 65.9
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-23 113.6 108 54.6
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.9e-23 112.8 103 63.1
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-22 111.7 86 60.5
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 1.1e-22 111.7 124 46.8
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.8e-18 97.1 153 37.3
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.8e-15 86.7 80 57.5
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 6.4e-15 85.9 54 77.8
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.4e-14 84.0 337 27.3
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.7e-13 80.5 60 71.7
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 8.7e-12 75.5 57 63.2
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 2.8e-10 70.5 39 84.6
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.0e-09 66.6 98 36.7
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 9.0e-09 65.5 168 28.6
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-08 64.3 53 56.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 9.9e-08 62.0 43 67.4


User provided reference genes

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