Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1468.4 741 100.0
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1370.1 745 92.9
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1332.0 742 89.2
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 745 88.9
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 745 88.9
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 737 88.7
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1307.7 765 85.9
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 738 87.8
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 737 88.2
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 741 88.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 741 87.9
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 738 87.7
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 740 88.0
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 741 86.8
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 738 86.3
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 737 87.2
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 738 86.9
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 739 87.0
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1288.1 740 87.4
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1288.1 737 88.3
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 738 85.9
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1285.8 736 86.5
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 738 86.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 737 86.3
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 738 85.8
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1282.7 737 86.2
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1282.7 738 85.9
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1281.2 738 85.8
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 738 85.9
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 738 86.3
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1278.1 740 85.5
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1276.9 738 85.5
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1273.8 738 84.8
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 738 85.8
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1271.9 737 85.5
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1270.8 737 85.6
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1270.4 744 84.8
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 738 85.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 737 85.5
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 741 85.3
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 741 85.0
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1268.4 738 85.1
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 740 85.3
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 741 85.8
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1266.5 739 85.1
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 748 85.3
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1265.8 743 84.8
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1265.4 742 85.0
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1265.4 738 85.4
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1265.0 738 84.7
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1265.0 736 85.1
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1262.7 738 84.7
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1262.7 739 84.8
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1262.3 742 84.8
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1262.3 738 84.4
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1261.5 743 85.1
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1261.5 736 85.1
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1261.1 737 85.1
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1261.1 738 84.3
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1260.7 738 85.8
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1260.7 741 85.0
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 738 84.3
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 742 84.4
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 731 85.4
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1259.6 737 84.1
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 738 84.6
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 743 84.7
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1256.5 737 84.4
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1256.1 738 85.0
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1255.7 736 84.5
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1255.7 760 83.4
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1255.7 760 83.4
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1255.4 736 85.1
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1254.2 732 84.8
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1253.4 732 84.8
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1250.7 741 84.2
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1250.7 741 84.8
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1250.3 741 84.2
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 732 84.6
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1249.6 732 84.4
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1249.6 736 84.1
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1249.2 740 84.5
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1248.8 737 84.8
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1248.4 741 84.2
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 739 84.6
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1246.9 733 84.6
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1246.5 732 84.3
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1246.1 732 84.3
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1246.1 741 85.0
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1245.3 740 84.9
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1245.0 728 84.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1245.0 732 84.6
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 732 84.7
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 738 84.8
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1240.3 805 79.0
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1239.6 735 84.2
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1238.8 740 84.3
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1236.9 738 83.2
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1236.1 742 83.6
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1234.6 732 84.0
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 737 82.9
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1228.0 704 86.6
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1227.6 720 85.4
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 708 85.9
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1218.4 818 76.4
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1217.6 768 80.5
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1217.2 753 81.9
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1216.4 746 81.5
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1204.9 705 85.4
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1203.0 702 85.2
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1197.2 669 88.2
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1196.0 740 81.1
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1192.9 670 88.5
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1188.3 741 79.6
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1185.6 733 81.6
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1180.6 741 80.4
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1177.9 732 82.1
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1151.3 746 77.6
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1142.9 740 79.5
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1122.5 616 89.3
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1114.4 737 76.0
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1104.7 683 79.9
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1103.2 630 85.9
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1092.8 739 73.6
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.0e-311 1073.2 744 72.3
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.2e-305 1052.0 704 73.9
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.9e-293 1012.3 639 79.0
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 5.5e-240 834.7 667 62.5
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 2.3e-230 802.7 696 59.2
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.9e-222 775.4 540 75.2
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.4e-214 750.4 648 61.0
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 5.2e-206 721.8 523 72.3
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 2.0e-205 719.9 453 80.4
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.3e-193 680.6 466 76.0
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.2e-193 679.9 741 53.2
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.1e-192 677.6 739 53.0
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 6.4e-132 475.7 433 61.4
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 7.1e-131 472.2 263 87.5
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.7e-87 327.0 215 77.2
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 6.3e-79 299.7 579 36.4
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.5e-75 287.7 151 91.4
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 1.2e-69 268.9 143 91.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.3e-59 233.8 170 72.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 2.6e-40 171.4 273 39.6
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 4.1e-38 164.1 84 91.7
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 8.6e-36 156.4 98 76.5
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.6e-34 152.1 80 90.0
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 6.6e-28 130.2 72 84.7
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.2e-26 123.6 80 73.8
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 1.1e-25 122.9 71 83.1
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 3.4e-24 117.9 69 76.8
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.6e-21 109.0 70 75.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 3.5e-21 107.8 85 64.7
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 8.7e-20 103.2 108 53.7
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 7.4e-19 100.1 75 70.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.3e-18 99.4 73 71.2
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.3e-18 99.4 85 60.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 6.2e-18 97.1 75 68.0
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 4.0e-17 94.4 222 33.3
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 5.5e-14 84.0 47 87.2
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 1.8e-12 79.0 47 87.2
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 4.3e-11 74.3 61 59.0
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 2.1e-10 72.0 40 87.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.8e-10 70.9 43 72.1
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.2e-10 70.5 47 70.2
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.8e-09 68.9 90 44.4
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.4e-09 68.6 46 69.6
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.1e-09 68.2 45 71.1
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 2.6e-08 65.1 33 90.9
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 3.4e-08 64.7 66 54.5
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 3.2e-06 58.2 58 55.2


User provided reference genes

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