Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 4.8e-114 414.5 201 100.0
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 8.8e-84 313.9 199 72.9
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.2e-79 299.3 207 68.6
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.2e-79 299.3 207 68.6
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 4.2e-78 295.0 207 68.6
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.0e-75 286.2 202 70.8
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 5.7e-75 284.6 200 68.0
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.3e-74 283.5 208 64.9
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.7e-74 283.1 208 65.9
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.7e-74 283.1 202 70.3
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.7e-74 282.0 201 69.2
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-73 280.4 199 68.8
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 2.4e-73 279.3 200 66.5
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 5.9e-72 274.6 193 68.9
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.3e-71 273.5 201 67.2
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 6.5e-71 271.2 201 67.2
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 4.2e-70 268.5 201 65.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 9.4e-70 267.3 195 64.6
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.6e-69 266.5 199 64.8
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.6e-69 266.5 207 62.8
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.7e-69 265.8 199 62.8
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.0e-68 263.8 199 62.3
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.4e-68 263.5 201 61.7
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 3.0e-68 262.3 207 62.8
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 5.2e-68 261.5 207 62.3
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 6.8e-68 261.2 207 62.3
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 2.0e-67 259.6 199 59.3
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 4.4e-67 258.5 199 62.8
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 7.5e-67 257.7 207 61.4
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.8e-66 255.8 202 63.4
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 3.7e-66 255.4 199 63.8
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 4.8e-66 255.0 201 63.2
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 2.4e-65 252.7 212 60.4
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.1e-65 252.3 210 61.4
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.6e-64 250.0 201 63.2
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 2.7e-64 249.2 216 58.8
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 2.7e-64 249.2 241 55.6
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 7.7e-64 247.7 201 58.2
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 1.7e-63 246.5 199 58.8
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.7e-63 246.5 244 53.7
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.1e-62 243.8 201 60.7
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 1.5e-62 243.4 201 59.2
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.5e-62 242.7 201 58.2
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 4.2e-62 241.9 201 57.7
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.5e-62 241.5 201 58.7
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.5e-62 241.5 201 58.2
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 5.5e-62 241.5 201 58.7
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 5.5e-62 241.5 210 58.1
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 5.5e-62 241.5 244 52.9
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 7.2e-62 241.1 215 57.7
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 9.5e-62 240.7 206 57.8
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 9.5e-62 240.7 201 59.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.6e-61 240.0 199 58.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.6e-61 240.0 201 58.2
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 2.1e-61 239.6 201 59.2
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 4.7e-61 238.4 201 58.2
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 4.7e-61 238.4 201 58.2
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 6.1e-61 238.0 206 56.8
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 8.0e-61 237.7 199 55.8
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.0e-60 237.3 199 57.8
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 1.4e-60 236.9 207 58.9
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 4.0e-60 235.3 199 55.3
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 4.0e-60 235.3 235 54.5
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 4.0e-60 235.3 235 54.5
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 5.2e-60 235.0 207 57.0
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.2e-59 233.8 217 53.0
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.5e-59 233.4 183 61.2
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.0e-59 233.0 199 55.8
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.0e-59 233.0 199 55.8
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.0e-59 233.0 199 55.8
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 2.0e-59 233.0 215 55.8
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.0e-59 233.0 184 63.0
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 3.4e-59 232.3 199 57.3
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 4.4e-59 231.9 201 57.7
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.3e-58 230.3 199 56.3
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 6.3e-58 228.0 172 63.4
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.3e-58 228.0 201 57.2
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 6.3e-58 228.0 232 52.6
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.1e-57 227.3 207 58.0
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.4e-57 224.9 161 70.2
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 9.2e-57 224.2 199 55.8
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 2.0e-56 223.0 199 54.3
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 3.5e-56 222.2 187 57.8
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.3e-55 220.3 205 52.7
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.3e-55 219.5 197 57.4
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 2.3e-55 219.5 199 53.8
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 2.9e-55 219.2 199 52.3
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.8e-55 218.8 184 58.2
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.8e-55 218.8 212 52.8
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.6e-55 217.6 186 58.1
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 2.1e-53 213.0 196 54.6
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 3.6e-53 212.2 190 58.4
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 4.7e-53 211.8 200 52.5
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.4e-52 210.3 199 49.7
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 5.2e-52 208.4 228 45.6
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 6.8e-52 208.0 202 52.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.2e-51 207.2 199 51.8
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.2e-51 207.2 202 51.5
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 2.2e-50 203.0 199 47.2
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 3.7e-50 202.2 269 45.0
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.4e-49 199.5 176 58.0
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 3.2e-49 199.1 200 48.0
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 9.2e-49 197.6 199 49.7
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 9.2e-49 197.6 201 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 4.3e-46 188.7 199 44.2
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 2.1e-45 186.4 134 70.9
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 2.8e-45 186.0 201 50.2
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 7.5e-43 177.9 157 58.0
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.1e-38 164.1 133 60.9
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 4.3e-38 162.2 200 43.5
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 7.3e-38 161.4 128 56.2
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 2.8e-37 159.5 211 39.3
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 3.6e-37 159.1 128 58.6
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 4.7e-37 158.7 96 77.1
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 4.0e-36 155.6 199 44.2
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 8.9e-36 154.5 104 72.1
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.4e-33 147.1 149 52.3
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 1.9e-33 146.7 211 38.9
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.1e-32 143.3 198 42.4
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 7.8e-32 141.4 114 57.0
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.3e-31 139.8 134 50.0
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 1.5e-30 137.1 101 62.4
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.5e-30 134.4 101 64.4
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.8e-28 130.2 98 60.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 4.0e-28 129.0 139 50.4
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 2.0e-27 126.7 98 60.2
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-24 117.5 98 62.2
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 2.3e-23 113.2 70 74.3
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 2.5e-22 109.8 86 62.8
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 4.3e-22 109.0 68 76.5
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 8.1e-21 104.8 106 47.2
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 3.1e-20 102.8 118 48.3
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.0e-19 100.1 100 54.0
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-18 97.4 75 65.3
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.1e-17 94.4 63 66.7
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 4.2e-17 92.4 109 53.2
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.6e-16 90.5 111 44.1
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.1e-16 90.1 70 58.6
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.0e-15 87.8 73 54.8
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.9e-15 85.9 70 58.6
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 5.1e-15 85.5 72 56.9
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.1e-12 76.3 47 72.3
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 3.4e-11 72.8 113 38.9
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 2.9e-10 69.7 72 47.2
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 5.4e-09 65.5 44 70.5
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.1e-09 65.1 57 56.1
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 1.0e-07 61.2 46 60.9
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.3e-07 60.1 61 52.5
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-07 59.7 48 60.4
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 5.1e-07 58.9 45 53.3
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 1.9e-06 57.0 133 29.3
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 1.9e-06 57.0 133 29.3
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 1.9e-06 57.0 133 28.6
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 2.5e-06 56.6 133 28.6
Aa31LG1G11990 Aethionema arabicum HOM05D004044 ORTHO05D004841 3.3e-06 56.2 133 28.6
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 3.3e-06 56.2 41 58.5
Thhalv10014822m.g Eutrema salsugineum HOM05D004044 ORTHO05D004841 4.3e-06 55.8 133 28.6
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 4.3e-06 55.8 133 27.8
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 5.6e-06 55.5 45 55.6
Rhsim10G0155000 Rhododendron simsii HOM05D004044 ORTHO05D004841 5.6e-06 55.5 145 26.2
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 7.4e-06 55.1 41 56.1
Cpa.g.sc81.63 Carica papaya HOM05D004044 ORTHO05D004841 9.6e-06 54.7 133 28.6
Sc12g0001200 Simmondsia chinensis HOM05D004044 ORTHO05D004841 9.6e-06 54.7 133 27.8
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 9.6e-06 54.7 133 27.8


User provided reference genes

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