Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.6e-263 912.1 454 100.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.0e-92 342.8 681 35.7
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.5e-91 338.6 637 37.8
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.0e-87 328.2 562 38.4
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 9.5e-86 321.6 629 36.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.1e-84 318.2 506 39.3
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.4e-83 313.2 551 36.7
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 4.4e-83 312.8 562 36.8
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.4e-81 305.8 635 36.4
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 5.4e-81 305.8 552 37.3
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 5.4e-81 305.8 551 37.2
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.6e-80 304.3 552 37.1
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.1e-80 303.9 666 33.3
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.0e-79 301.6 677 34.1
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.3e-79 301.2 550 36.4
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.3e-79 301.2 536 37.1
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.9e-78 297.4 540 36.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 4.3e-78 296.2 566 35.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 5.6e-78 295.8 647 35.1
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 7.3e-78 295.4 554 35.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.5e-78 295.0 558 35.3
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.2e-77 294.7 667 33.6
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.6e-77 293.1 550 36.4
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.1e-77 292.0 551 35.9
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.1e-76 291.6 670 33.7
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.4e-76 290.4 545 34.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 6.8e-76 288.9 555 34.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.2e-75 288.1 534 35.8
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.4e-75 286.2 541 35.1
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 4.4e-75 286.2 555 37.7
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 9.9e-75 285.0 387 45.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.2e-74 283.9 662 32.8
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.9e-74 283.5 662 32.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.8e-74 283.1 560 34.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 6.4e-74 282.3 568 34.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 8.4e-74 282.0 552 34.6
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.4e-73 280.4 366 45.4
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.2e-73 279.6 659 32.5
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 4.2e-73 279.6 512 36.7
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 9.2e-73 278.5 522 35.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 9.2e-73 278.5 653 32.6
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 9.2e-73 278.5 617 33.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.2e-72 278.1 665 33.4
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.2e-72 278.1 665 33.4
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.6e-72 277.7 512 34.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.1e-72 277.3 547 34.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.7e-72 276.9 501 36.9
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.7e-72 276.9 596 33.6
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.7e-72 276.9 546 34.2
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 6.0e-72 275.8 665 32.3
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 6.0e-72 275.8 512 35.9
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 7.8e-72 275.4 513 36.8
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.0e-71 275.0 389 42.4
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.0e-71 275.0 512 35.7
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.3e-71 274.6 600 33.3
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.7e-71 274.2 555 35.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 3.9e-71 273.1 525 35.2
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 3.9e-71 273.1 633 31.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.1e-71 272.7 665 31.7
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 8.7e-71 271.9 542 34.7
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.1e-70 271.6 617 33.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.5e-70 270.4 620 33.4
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.8e-69 266.9 339 46.9
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.6e-69 266.5 541 34.6
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.6e-69 266.5 544 33.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.4e-68 263.8 560 33.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 3.1e-68 263.5 557 33.8
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.3e-68 262.7 377 42.4
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.2e-67 261.5 408 40.4
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.0e-67 260.8 496 34.3
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 2.0e-67 260.8 549 33.7
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.3e-66 258.1 546 33.0
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.3e-66 258.1 552 32.2
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.7e-66 257.7 549 34.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.9e-66 256.9 512 34.6
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.8e-66 256.5 512 33.8
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 4.9e-66 256.1 555 32.8
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.9e-65 254.2 547 33.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.7e-64 250.4 359 42.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.3e-63 247.3 552 33.0
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.9e-63 246.5 563 32.1
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 5.1e-63 246.1 529 34.2
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.7e-63 245.4 541 31.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 8.7e-63 245.4 563 32.1
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.5e-62 244.6 492 34.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.3e-62 243.4 371 42.9
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.6e-62 242.7 555 31.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 7.3e-62 242.3 342 43.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 7.3e-62 242.3 677 28.5
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 7.3e-62 242.3 506 33.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 7.3e-62 242.3 508 33.1
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 9.6e-62 241.9 343 43.7
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 9.6e-62 241.9 343 43.7
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.6e-61 241.1 351 43.0
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.4e-60 237.3 341 44.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 6.9e-60 235.7 338 44.1
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 9.0e-60 235.3 520 32.5
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.2e-59 235.0 344 40.1
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 4.9e-58 229.6 491 33.2
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.4e-58 229.2 374 40.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 8.4e-58 228.8 366 42.6
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.1e-57 228.4 339 42.5
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.1e-56 224.2 350 41.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.5e-56 223.4 370 40.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-55 220.7 376 39.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 3.9e-55 219.9 344 38.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 3.9e-55 219.9 503 32.2
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-54 218.4 488 30.9
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 9.6e-54 215.3 509 32.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.7e-53 213.4 488 31.4
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 6.2e-53 212.6 412 35.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.4e-52 210.7 333 38.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 9.0e-52 208.8 498 32.5
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 5.8e-51 206.1 546 29.1
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.9e-49 201.1 348 37.6
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.5e-46 190.7 370 36.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.8e-44 184.5 216 45.8
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.5e-41 174.1 553 29.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.2e-41 173.7 567 26.1
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.8e-39 167.9 576 26.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-36 157.9 233 38.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.1e-36 157.1 260 36.2
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 8.5e-34 149.1 204 41.2
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.1e-33 148.7 98 72.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.1e-32 144.4 396 29.3
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.3e-31 141.0 524 24.6
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.9e-26 124.0 96 66.7
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.9e-25 121.3 271 35.1
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.5e-25 119.8 132 56.8
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.9e-24 115.9 354 25.7
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 6.7e-23 112.8 186 37.6
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.2e-21 107.8 215 33.0
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 6.3e-21 106.3 85 58.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 8.2e-21 105.9 85 58.8
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.6e-19 100.9 264 29.2
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.9e-19 99.8 182 34.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.7e-14 82.4 110 40.0
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.0e-11 74.7 75 52.0
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.9e-09 68.2 81 51.9
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 4.2e-09 67.0 112 34.8
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 9.4e-09 65.9 51 54.9
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 4.7e-08 63.5 52 50.0
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.5e-06 58.5 137 27.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.4e-06 57.4 51 45.1


User provided reference genes

Program Settings