Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 0.0e+00 2269.2 1138 100.0
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 0.0e+00 1245.3 1146 58.8
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 0.0e+00 1228.4 1148 58.4
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 0.0e+00 1221.1 1150 57.6
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.3e-304 1050.0 1077 55.3
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 5.2e-298 1028.1 1160 50.7
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 8.5e-293 1010.7 1151 49.4
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.6e-286 989.9 1197 49.0
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 1.3e-285 986.9 1158 48.6
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 2.3e-285 986.1 1156 49.4
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 2.0e-281 973.0 1160 48.4
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.6e-281 972.6 1179 49.0
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 4.6e-278 961.8 1194 47.5
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 8.6e-277 957.6 1150 48.8
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 3.1e-274 949.1 1163 46.9
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 5.8e-273 944.9 1166 47.9
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 3.7e-272 942.2 1191 46.1
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 2.5e-268 929.5 1235 46.2
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 2.5e-268 929.5 1151 46.8
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 5.6e-268 928.3 1154 48.2
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.2e-265 920.6 1247 46.2
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 2.3e-261 906.4 1192 45.8
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.3e-260 902.5 1247 45.1
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 2.1e-259 899.8 1168 45.1
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 2.3e-258 896.3 1192 45.8
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.6e-257 892.9 1161 45.2
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 5.8e-257 891.7 1194 44.9
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 7.6e-257 891.3 1170 46.0
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 7.8e-254 881.3 1165 46.0
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 7.8e-254 881.3 1026 48.3
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.3e-253 879.8 1026 48.2
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.3e-253 879.8 1182 46.4
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 6.6e-253 878.2 1155 45.3
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.2e-251 874.0 1124 47.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 1.6e-251 873.6 1159 45.2
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.6e-251 872.5 1202 43.8
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 3.6e-251 872.5 1162 44.7
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.8e-249 865.1 1272 43.5
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.2e-248 863.2 1164 44.6
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 2.9e-248 862.8 1204 43.3
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 6.4e-248 861.7 1209 43.4
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.4e-247 860.5 1180 44.9
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 2.4e-247 859.8 1197 44.9
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 4.2e-247 859.0 1205 43.7
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 3.0e-245 852.8 1275 42.0
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 6.6e-245 851.7 1086 46.6
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 5.6e-244 848.6 1081 47.3
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.6e-243 847.0 1181 43.4
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 2.8e-243 846.3 1042 46.8
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.1e-243 844.7 1213 42.1
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 5.8e-241 838.6 1220 42.7
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 9.9e-241 837.8 1158 43.9
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.3e-240 837.4 1155 43.1
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 1.7e-240 837.0 1197 42.4
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 4.9e-240 835.5 1176 43.8
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 6.4e-240 835.1 1204 42.7
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.2e-238 830.9 1263 42.1
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.0e-237 827.8 1217 42.3
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 8.7e-237 824.7 1143 44.7
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.1e-236 824.3 1197 42.9
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.5e-236 823.9 1145 43.9
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.5e-236 823.2 1158 43.4
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 4.3e-236 822.4 1140 42.1
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 5.6e-236 822.0 1083 44.0
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 7.3e-236 821.6 1208 41.7
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 3.6e-235 819.3 1273 41.2
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 6.2e-235 818.5 946 48.4
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.1e-234 817.8 976 48.4
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 6.4e-232 808.5 1180 42.8
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 8.4e-232 808.1 1163 42.5
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.2e-231 805.8 1309 40.2
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 7.1e-231 805.1 1296 40.6
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 2.7e-230 803.1 1143 43.9
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 7.9e-230 801.6 1265 40.2
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.1e-226 791.2 1169 42.1
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 1.4e-226 790.8 1202 41.9
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.4e-226 790.0 1167 41.7
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 2.0e-225 786.9 960 46.6
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 7.6e-225 785.0 1096 43.4
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.9e-224 783.1 1295 40.0
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 3.8e-224 782.7 1141 42.0
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 8.4e-224 781.6 1137 42.5
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.5e-223 780.0 1180 42.0
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 7.9e-222 775.0 1180 41.9
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.8e-221 773.9 1196 40.8
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 5.1e-221 772.3 1183 40.7
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 6.7e-221 771.9 1187 41.1
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 6.3e-219 765.4 1182 42.4
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 6.3e-219 765.4 1182 42.4
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 8.4e-216 755.0 641 59.4
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 4.3e-212 742.7 919 48.0
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.2e-211 740.3 1263 39.7
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.0e-205 721.5 1143 40.2
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.2e-200 703.7 686 52.8
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 6.1e-198 695.7 631 57.5
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.8e-195 686.8 856 45.7
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 2.1e-190 670.6 1041 42.7
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 3.3e-188 663.3 1128 38.9
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 5.7e-188 662.5 1093 40.5
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.6e-185 654.4 1087 39.1
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.3e-184 651.4 1016 41.4
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.0e-180 637.5 637 52.4
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 4.7e-174 616.3 899 43.0
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 5.2e-165 586.3 1139 36.3
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 5.9e-161 572.8 644 50.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 7.8e-153 545.8 1103 35.5
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 4.4e-148 530.0 764 44.2
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.1e-134 484.6 746 40.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.8e-134 484.2 842 40.3
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.8e-133 481.5 508 51.8
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.9e-131 473.4 432 55.8
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.9e-130 471.5 815 39.8
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 6.2e-110 403.3 638 35.7
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 3.8e-107 394.0 652 37.3
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.3e-99 369.0 783 36.3
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 2.9e-99 367.9 999 31.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.9e-98 365.2 999 31.0
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 2.5e-98 364.8 1103 31.2
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.1e-97 360.1 343 53.4
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 3.6e-89 334.3 303 54.8
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.4e-87 327.4 798 34.0
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 5.7e-87 327.0 319 53.6
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 5.2e-80 303.9 297 52.5
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 5.2e-80 303.9 266 54.5
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 9.1e-61 240.0 403 34.7
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.0e-56 224.9 354 38.1
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 5.4e-53 214.2 468 34.0
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.7e-36 158.7 264 39.0
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.5e-31 142.9 531 27.3
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 7.1e-29 134.0 321 35.5
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 3.3e-26 125.2 293 27.6
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 5.6e-26 124.4 227 37.9
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 6.2e-25 120.9 264 33.0
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 3.3e-10 72.0 79 53.2
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 2.9e-06 58.9 45 66.7
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 4.9e-06 58.2 124 34.7
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 6.4e-06 57.8 215 32.6


User provided reference genes

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