Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 0.0e+00 1124.4 564 100.0
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.0e-222 776.9 555 71.7
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.3e-222 775.8 566 71.9
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 9.0e-219 763.8 558 69.0
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.0e-217 760.4 552 71.2
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 6.3e-204 714.5 569 67.1
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 8.5e-201 704.1 557 65.0
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 4.2e-200 701.8 562 64.4
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 2.7e-199 699.1 549 66.1
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 3.6e-199 698.7 546 65.4
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 3.6e-199 698.7 554 64.4
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 4.7e-199 698.4 560 65.4
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 5.1e-198 694.9 545 66.6
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.0e-197 693.0 559 63.9
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 4.4e-197 691.8 552 64.5
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 2.8e-196 689.1 558 63.6
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 2.8e-196 689.1 564 63.1
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.4e-195 686.8 555 64.1
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.4e-195 686.8 558 64.0
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 1.8e-195 686.4 546 65.4
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 3.1e-195 685.6 554 63.7
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 5.3e-195 684.9 550 62.7
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 6.9e-195 684.5 568 63.4
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 6.9e-195 684.5 549 64.1
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 9.1e-195 684.1 571 63.4
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 1.2e-194 683.7 548 63.5
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.4e-194 682.2 555 63.1
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.4e-194 682.2 559 63.3
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 4.5e-194 681.8 564 63.7
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 4.5e-194 681.8 555 62.7
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 5.9e-194 681.4 563 62.7
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.0e-193 680.6 556 63.5
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 2.2e-193 679.5 556 63.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.4e-192 676.8 555 62.3
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.9e-192 676.4 546 63.7
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 2.5e-192 676.0 559 63.5
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 3.2e-192 675.6 561 62.4
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 3.2e-192 675.6 555 63.4
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 7.2e-192 674.5 566 61.7
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 7.2e-192 674.5 556 62.4
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 9.4e-192 674.1 561 63.5
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 1.2e-191 673.7 554 61.9
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 2.1e-191 672.9 557 63.0
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 2.1e-191 672.9 557 63.0
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 3.6e-191 672.2 561 62.2
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 8.0e-191 671.0 581 59.4
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 8.0e-191 671.0 562 61.9
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.0e-190 670.6 546 62.8
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 1.0e-190 670.6 574 61.5
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 5.2e-190 668.3 559 62.8
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 8.8e-190 667.5 570 60.9
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 8.8e-190 667.5 543 64.5
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.1e-189 667.2 572 62.4
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 2.0e-189 666.4 547 60.5
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 4.4e-189 665.2 526 66.2
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 4.4e-189 665.2 558 61.5
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 7.4e-189 664.5 547 60.5
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 1.7e-188 663.3 591 60.2
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 6.3e-188 661.4 568 62.0
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 1.1e-187 660.6 565 61.9
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.4e-187 660.2 555 60.9
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 5.3e-187 658.3 562 61.2
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 7.0e-187 657.9 553 62.0
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 2.0e-186 656.4 583 60.2
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 4.5e-186 655.2 556 62.4
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 7.7e-186 654.4 543 61.5
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 3.8e-185 652.1 572 60.3
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 8.5e-185 651.0 556 61.7
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.1e-184 650.6 562 61.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.6e-183 646.7 539 62.5
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.0e-182 644.0 599 58.6
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 9.7e-181 637.5 564 58.9
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 3.1e-179 632.5 564 58.5
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 1.2e-178 630.6 548 61.1
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.2e-178 630.6 662 52.9
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 2.7e-178 629.4 556 59.5
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 2.2e-177 626.3 556 58.3
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 4.2e-176 622.1 535 60.2
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 1.6e-175 620.2 546 59.7
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 4.4e-173 612.1 553 58.2
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 5.7e-173 611.7 543 58.7
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 5.0e-169 598.6 561 56.5
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 3.3e-168 595.9 472 65.0
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 2.8e-167 592.8 531 58.2
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.5e-165 587.0 592 55.2
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 7.5e-165 584.7 390 72.8
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 2.8e-164 582.8 573 53.9
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 7.0e-163 578.2 508 59.3
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 7.0e-163 578.2 498 60.8
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 7.8e-162 574.7 495 60.0
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 2.5e-160 569.7 552 57.1
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 8.9e-158 561.2 595 54.1
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 2.6e-157 559.7 518 58.5
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 2.1e-151 540.0 336 75.6
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.7e-151 538.9 558 53.4
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 4.7e-151 538.9 490 57.3
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.7e-143 512.3 563 51.0
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.9e-139 500.4 580 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.2e-139 499.6 548 48.2
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 2.7e-138 496.5 555 48.1
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.1e-134 484.6 438 58.9
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.7e-129 467.2 275 79.6
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 4.3e-128 462.6 276 77.9
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 9.3e-123 444.9 480 50.8
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.1e-119 433.7 346 62.1
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 5.3e-110 402.5 322 59.6
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 6.9e-110 402.1 402 56.7
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.0e-105 388.3 552 44.2
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.7e-105 385.6 217 83.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 6.5e-100 369.0 538 42.8
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.3e-97 360.5 392 54.1
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.1e-90 337.4 416 51.0
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 5.3e-86 322.8 414 47.1
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.8e-84 316.6 270 58.5
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.9e-83 314.3 561 34.2
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 2.6e-80 303.9 186 75.8
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.3e-80 303.5 289 63.3
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 9.7e-80 302.0 506 37.7
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 2.8e-79 300.4 186 75.3
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.5e-77 293.5 515 35.5
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.4e-73 281.6 208 64.4
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 7.0e-70 269.2 301 52.2
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 8.5e-68 262.3 312 42.3
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 7.7e-61 239.2 314 40.8
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 3.0e-57 227.3 280 48.9
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 1.2e-56 225.3 282 48.9
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 2.8e-55 220.7 140 71.4
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.0e-52 212.2 297 44.1
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 6.6e-52 209.5 112 83.9
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.5e-43 181.0 356 33.4
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 3.1e-41 174.1 358 27.4
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.7e-39 167.2 244 44.3
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 3.5e-37 160.6 93 79.6
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 4.0e-33 147.1 128 57.0
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 4.4e-32 143.7 594 25.6
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 3.5e-29 134.0 82 75.6
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 7.8e-21 106.3 98 55.1
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 4.3e-19 100.5 60 78.3
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 6.8e-17 93.2 191 33.0
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.3e-12 79.0 55 63.6
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.3e-12 79.0 60 56.7
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 5.3e-09 67.0 168 26.8
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 4.9e-07 60.5 40 67.5


User provided reference genes

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