Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22846 Selenicereus undatus HOM05D000006 ORTHO05D004030 1.6e-73 279.3 137 100.0
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 4.8e-41 171.4 104 81.7
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 3.3e-34 148.7 104 68.3
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 2.2e-33 146.0 104 67.3
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 4.8e-33 144.8 126 59.5
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 1.0e-30 137.1 104 64.4
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 3.8e-22 108.6 129 51.9
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 6.5e-22 107.8 104 54.8
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 8.5e-22 107.5 116 50.9
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 4.2e-21 105.1 109 52.3
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 7.2e-21 104.4 57 82.5
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 7.2e-21 104.4 57 82.5
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 7.2e-21 104.4 90 58.9
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 9.4e-21 104.0 104 55.8
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 3.6e-20 102.1 104 52.9
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 6.1e-20 101.3 104 51.0
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 6.1e-20 101.3 105 54.3
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 8.0e-20 100.9 104 51.0
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 8.0e-20 100.9 108 48.1
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.0e-19 100.5 105 48.6
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 1.4e-19 100.1 69 71.0
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.4e-19 100.1 104 48.1
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 1.8e-19 99.8 106 52.8
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 2.3e-19 99.4 105 48.6
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 2.3e-19 99.4 65 72.3
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 2.3e-19 99.4 105 55.2
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 4.0e-19 98.6 110 50.9
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 4.0e-19 98.6 64 73.4
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 5.2e-19 98.2 57 78.9
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 5.2e-19 98.2 104 50.0
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 6.8e-19 97.8 105 50.5
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 1.2e-18 97.1 121 44.6
Hma1.2p1_0221F.1_g093150 Hydrangea macrophylla HOM05D000006 ORTHO05D004030 1.5e-18 96.7 105 49.5
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 1.5e-18 96.7 58 74.1
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 1.5e-18 96.7 108 47.2
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 2.0e-18 96.3 108 50.0
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 2.0e-18 96.3 104 50.0
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 2.6e-18 95.9 105 48.6
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 2.6e-18 95.9 105 48.6
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 2.6e-18 95.9 105 49.5
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 2.6e-18 95.9 104 50.0
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 2.6e-18 95.9 77 62.3
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 2.6e-18 95.9 75 64.0
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 2.6e-18 95.9 64 70.3
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 3.4e-18 95.5 76 61.8
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 3.4e-18 95.5 89 52.8
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 3.4e-18 95.5 57 73.7
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 4.4e-18 95.1 58 70.7
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 4.4e-18 95.1 58 70.7
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 4.4e-18 95.1 100 50.0
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 5.7e-18 94.7 57 71.9
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 5.7e-18 94.7 108 47.2
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 7.5e-18 94.4 89 55.1
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 7.5e-18 94.4 89 55.1
CDE02G1028 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 7.5e-18 94.4 97 52.6
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 7.5e-18 94.4 63 66.7
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 9.7e-18 94.0 105 46.7
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 1.3e-17 93.6 101 51.5
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 1.3e-17 93.6 101 51.5
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 1.3e-17 93.6 101 51.5
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 1.3e-17 93.6 68 64.7
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 1.3e-17 93.6 89 52.8
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.3e-17 93.6 106 47.2
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 1.3e-17 93.6 111 48.6
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 1.3e-17 93.6 70 64.3
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 1.7e-17 93.2 104 50.0
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 1.7e-17 93.2 107 51.4
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 2.2e-17 92.8 57 71.9
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 2.8e-17 92.4 71 59.2
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 2.8e-17 92.4 106 46.2
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 3.7e-17 92.0 57 71.9
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 3.7e-17 92.0 108 46.3
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 3.7e-17 92.0 107 47.7
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 3.7e-17 92.0 104 50.0
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 3.7e-17 92.0 98 50.0
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 4.8e-17 91.7 98 49.0
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 4.8e-17 91.7 107 47.7
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 6.3e-17 91.3 76 60.5
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 6.3e-17 91.3 108 47.2
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 6.3e-17 91.3 96 51.0
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 6.3e-17 91.3 96 51.0
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 8.3e-17 90.9 98 49.0
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 8.3e-17 90.9 91 53.8
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 8.3e-17 90.9 57 70.2
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 8.3e-17 90.9 108 45.4
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 1.1e-16 90.5 76 59.2
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.1e-16 90.5 76 60.5
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.1e-16 90.5 64 70.3
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 1.4e-16 90.1 89 50.6
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 1.4e-16 90.1 89 50.6
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 1.4e-16 90.1 112 42.9
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 1.4e-16 90.1 89 50.6
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 1.8e-16 89.7 91 51.6
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.8e-16 89.7 62 66.1
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.8e-16 89.7 107 47.7
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 1.8e-16 89.7 64 65.6
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.8e-16 89.7 104 47.1
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 2.4e-16 89.4 63 63.5
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.4e-16 89.4 63 63.5
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 2.4e-16 89.4 55 72.7
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 7.0e-16 87.8 104 53.8
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 7.0e-16 87.8 85 51.8
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 7.0e-16 87.8 85 51.8
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 7.0e-16 87.8 85 51.8
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.0e-16 87.8 57 66.7
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 7.0e-16 87.8 107 46.7
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 7.0e-16 87.8 101 44.6
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 9.1e-16 87.4 84 50.0
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 9.1e-16 87.4 88 51.1
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 9.1e-16 87.4 89 51.7
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 1.2e-15 87.0 109 46.8
Cpa.g.sc42.140 Carica papaya HOM05D000006 ORTHO05D004030 1.6e-15 86.7 71 62.0
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.6e-15 86.7 62 62.9
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.6e-15 86.7 63 61.9
CDE07G1414 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 2.7e-15 85.9 74 62.2
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 2.7e-15 85.9 120 44.2
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 3.5e-15 85.5 89 50.6
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.0e-14 84.0 79 54.4
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 1.3e-14 83.6 105 44.8
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.9e-14 82.4 102 39.2
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 3.8e-14 82.0 53 69.8
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 3.8e-14 82.0 56 64.3
SEGI_07614 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 5.0e-14 81.6 56 66.1
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 8.5e-14 80.9 95 44.2
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 1.1e-13 80.5 90 47.8
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 1.1e-13 80.5 95 44.2
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 1.5e-13 80.1 46 76.1
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 2.5e-13 79.3 46 73.9
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 2.5e-13 79.3 44 77.3
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 2.5e-13 79.3 107 47.7
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 7.2e-13 77.8 44 75.0
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 1.2e-12 77.0 49 75.5
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.2e-12 77.0 87 48.3
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 2.1e-12 76.3 44 72.7
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 2.1e-12 76.3 146 36.3
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 2.1e-12 76.3 109 44.0
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 3.6e-12 75.5 73 53.4
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 1.0e-11 73.9 59 59.3
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 1.0e-11 73.9 46 76.1
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 2.3e-11 72.8 79 46.8
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 2.0e-10 69.7 81 48.1
EL10Ac6g13852 Beta vulgaris HOM05D000006 ORTHO05D004030 4.8e-09 65.1 36 80.6
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 1.8e-08 63.2 36 77.8
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 4.1e-08 62.0 36 75.0
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 5.4e-08 61.6 36 75.0
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 3.5e-07 58.9 55 52.7
EL10Ac1g01821 Beta vulgaris HOM05D000006 ORTHO05D088662 5.9e-07 58.2 50 54.0
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 1.3e-06 57.0 45 53.3
TAR376G0810 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.7e-06 56.6 43 58.1
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 8.6e-06 54.3 65 43.1


User provided reference genes

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