Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.5e-242 842.4 421 100.0
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.5e-213 746.1 425 88.2
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 3.6e-212 741.5 423 87.7
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.3e-209 733.0 400 89.0
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 8.2e-209 730.3 426 86.9
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 2.5e-205 718.8 424 84.4
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 3.2e-205 718.4 426 84.3
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 7.2e-205 717.2 426 84.3
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 7.2e-205 717.2 406 86.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 9.4e-205 716.8 426 84.0
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.0e-202 709.1 427 84.3
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 2.6e-202 708.8 406 85.7
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 7.5e-202 707.2 428 83.2
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.3e-201 706.4 407 85.0
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.7e-201 706.1 428 83.4
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 2.2e-201 705.7 426 84.0
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 2.8e-201 705.3 406 85.7
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.7e-201 704.9 426 83.3
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 3.7e-201 704.9 426 83.3
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 8.3e-201 703.7 397 87.4
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 8.3e-201 703.7 427 83.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 1.4e-200 703.0 426 83.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.4e-200 702.2 426 83.1
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 3.1e-200 701.8 427 83.6
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 3.1e-200 701.8 429 83.2
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 3.1e-200 701.8 401 86.5
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 3.1e-200 701.8 404 85.1
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 5.4e-200 701.0 426 83.8
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 7.0e-200 700.7 398 87.2
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.2e-199 699.9 424 82.8
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.6e-199 699.5 411 85.2
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.0e-199 699.1 401 85.8
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.0e-199 699.1 411 84.9
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 2.0e-199 699.1 406 84.7
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 4.5e-199 698.0 401 85.5
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 4.5e-199 698.0 417 83.0
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 4.5e-199 698.0 397 85.4
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 7.7e-199 697.2 401 85.8
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.3e-198 696.4 395 87.6
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.3e-198 696.4 402 84.8
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.7e-198 696.0 395 87.6
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.7e-198 696.0 432 82.6
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.7e-198 696.0 405 85.4
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.9e-198 695.3 411 84.9
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 2.9e-198 695.3 427 81.3
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.8e-198 694.9 397 84.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 3.8e-198 694.9 427 82.0
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 5.0e-198 694.5 398 86.9
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.0e-198 694.5 411 84.4
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 5.0e-198 694.5 396 86.6
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 8.6e-198 693.7 399 85.5
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 8.6e-198 693.7 396 85.9
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 1.5e-197 693.0 401 85.5
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.5e-197 692.2 396 84.8
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 4.2e-197 691.4 397 85.1
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 4.2e-197 691.4 396 85.1
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 9.5e-197 690.3 397 85.6
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 9.5e-197 690.3 396 85.6
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.2e-196 689.9 379 88.9
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.2e-196 689.9 387 86.8
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 1.2e-196 689.9 398 84.7
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 2.1e-196 689.1 367 91.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 6.1e-196 687.6 428 81.8
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 8.0e-196 687.2 395 86.1
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 1.0e-195 686.8 423 81.1
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.4e-195 686.4 414 83.3
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 2.3e-195 685.6 396 85.9
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.3e-195 685.6 395 85.6
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 4.0e-195 684.9 427 81.0
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 5.2e-195 684.5 395 85.6
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.5e-194 682.9 397 84.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 4.4e-194 681.4 421 80.0
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 4.4e-194 681.4 396 84.6
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 7.5e-194 680.6 367 90.7
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.2e-193 679.1 397 85.1
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 3.7e-193 678.3 413 80.4
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 4.9e-193 677.9 399 82.7
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 6.3e-193 677.6 420 79.3
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 6.3e-193 677.6 421 79.8
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 8.3e-193 677.2 420 79.0
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 8.3e-193 677.2 402 82.8
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.1e-192 676.8 399 82.5
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 7.0e-192 674.1 391 84.1
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 1.2e-191 673.3 403 82.1
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.2e-191 673.3 394 84.3
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 3.5e-191 671.8 403 81.9
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 3.5e-191 671.8 422 79.4
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 5.9e-191 671.0 368 89.7
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.7e-190 669.5 402 82.1
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 2.9e-190 668.7 422 78.4
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 3.8e-190 668.3 403 81.6
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 6.6e-190 667.5 421 79.3
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 3.3e-189 665.2 415 79.8
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 5.6e-189 664.5 402 81.1
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 9.5e-189 663.7 398 82.4
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-188 663.3 404 81.4
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 2.8e-188 662.1 404 81.4
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 8.0e-188 660.6 402 81.6
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 4.0e-187 658.3 402 81.3
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 6.8e-187 657.5 415 80.0
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 3.4e-186 655.2 416 77.9
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 1.7e-185 652.9 412 79.6
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 2.2e-185 652.5 402 80.8
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 6.4e-185 651.0 485 70.3
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.1e-184 650.2 395 83.3
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.4e-179 633.3 396 80.1
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.4e-178 628.6 396 79.5
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.9e-176 622.9 379 78.9
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 5.4e-176 621.3 398 74.1
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 8.6e-174 614.0 347 87.6
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 1.5e-173 613.2 352 85.8
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.3e-173 612.1 379 77.8
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 1.4e-171 606.7 416 73.1
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 4.0e-171 605.1 392 74.5
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 5.1e-158 561.6 390 69.2
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 7.3e-157 557.8 357 76.8
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.1e-155 552.4 358 76.3
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-154 550.4 386 72.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.3e-153 547.0 318 84.9
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 8.4e-153 544.3 402 66.2
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 2.1e-151 539.7 368 71.7
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 4.2e-144 515.4 378 65.1
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 1.8e-139 500.0 288 84.7
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 1.8e-126 456.8 299 76.9
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 6.7e-126 454.9 414 59.4
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.2e-111 407.5 267 77.9
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 7.2e-104 381.7 280 72.1
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.8e-71 273.5 357 42.0
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 4.0e-70 269.6 329 43.8
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.9e-64 250.8 183 71.6
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 4.9e-52 209.5 118 88.1
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 1.4e-46 191.4 113 78.8
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 8.7e-33 145.6 84 81.0
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 4.0e-30 136.7 84 77.4
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 3.4e-29 133.7 84 75.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.7e-28 131.3 125 63.2
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 2.8e-23 114.0 57 87.7
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.4e-22 111.7 79 70.9
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 9.9e-21 105.5 90 64.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.8e-15 86.7 194 30.9
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 7.6e-13 79.3 49 77.6
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 6.7e-09 66.2 40 70.0
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 5.7e-08 63.2 66 51.5


User provided reference genes

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