Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 0.0e+00 1134.8 575 100.0
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.7e-236 822.8 524 80.3
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 8.3e-236 820.5 524 80.2
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 2.4e-235 818.9 521 79.8
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 1.1e-232 810.1 520 78.1
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 6.4e-212 741.1 532 72.7
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.5e-205 719.9 522 72.0
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.5e-205 719.9 522 70.3
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 4.4e-205 718.4 523 72.1
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.1e-203 713.8 521 71.4
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 1.4e-203 713.4 526 71.7
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 1.4e-203 713.4 525 70.9
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 2.3e-201 706.1 529 70.7
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.0e-201 705.7 521 69.9
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 1.1e-200 703.7 522 69.7
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.5e-200 703.4 522 71.3
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 5.6e-200 701.4 525 69.7
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 7.3e-200 701.0 527 69.8
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.2e-199 700.3 527 69.8
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 1.2e-199 700.3 522 69.7
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.2e-199 700.3 522 70.5
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.6e-199 698.7 527 69.4
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 3.6e-199 698.7 526 69.0
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 1.1e-198 697.2 528 69.1
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 1.4e-198 696.8 520 70.2
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 5.2e-198 694.9 524 69.1
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 1.5e-197 693.3 529 68.6
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 4.4e-197 691.8 550 66.4
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 1.3e-196 690.3 523 69.4
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.3e-196 690.3 529 68.4
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.3e-196 690.3 521 69.3
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.8e-196 688.7 525 69.5
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 4.9e-196 688.3 518 68.7
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.2e-194 683.7 521 68.5
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 1.2e-194 683.7 524 67.4
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 1.6e-194 683.3 528 68.4
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 2.7e-194 682.6 525 69.0
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.7e-193 679.9 525 68.8
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 8.7e-193 677.6 521 67.4
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.5e-192 676.0 568 64.1
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 9.6e-192 674.1 530 66.2
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.6e-191 672.2 521 67.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.4e-190 670.2 523 67.1
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 4.0e-190 668.7 525 66.7
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 4.0e-190 668.7 530 67.9
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 4.0e-190 668.7 525 67.4
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 6.9e-190 667.9 524 67.4
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 9.0e-190 667.5 523 67.5
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 5.8e-189 664.8 519 67.8
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 8.4e-188 661.0 520 67.5
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 3.2e-187 659.1 525 65.3
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 4.2e-187 658.7 520 65.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 5.4e-187 658.3 543 65.0
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 7.1e-187 657.9 524 65.6
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 7.1e-187 657.9 523 66.3
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 2.1e-186 656.4 525 66.3
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 7.9e-186 654.4 517 66.2
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.0e-185 654.1 523 65.4
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.7e-185 653.3 528 64.8
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.7e-185 653.3 524 67.2
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 3.0e-185 652.5 524 63.9
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 4.3e-184 648.7 569 61.5
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 5.6e-184 648.3 525 66.1
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.1e-183 646.4 507 67.5
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 2.8e-183 646.0 522 65.3
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 2.4e-182 642.9 520 65.8
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 3.1e-182 642.5 519 65.9
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 4.0e-182 642.1 521 66.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.9e-182 641.3 490 69.2
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 6.9e-182 641.3 525 65.1
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 9.0e-182 641.0 506 67.4
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.5e-181 640.2 524 64.7
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.4e-181 639.0 498 68.1
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 7.6e-181 637.9 549 62.3
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.2e-180 636.3 517 63.8
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 2.2e-180 636.3 517 63.8
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.2e-180 636.3 517 64.6
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 2.2e-180 636.3 512 65.6
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 3.8e-180 635.6 559 62.4
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 2.4e-179 632.9 518 64.3
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 1.2e-178 630.6 546 63.0
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 2.7e-178 629.4 517 64.6
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.0e-178 628.2 521 64.7
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 1.8e-177 626.7 495 66.5
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 3.0e-177 625.9 518 64.9
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 5.1e-177 625.2 518 64.9
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 6.7e-177 624.8 519 64.5
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 8.7e-177 624.4 517 63.8
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 8.7e-177 624.4 517 63.8
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.6e-175 620.2 526 63.7
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 4.8e-175 618.6 529 62.8
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 3.1e-174 615.9 520 63.8
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 9.0e-174 614.4 524 63.2
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 8.7e-169 597.8 516 61.8
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.5e-168 597.0 516 62.2
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 2.6e-165 586.3 542 59.6
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 3.4e-165 585.9 516 61.6
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 5.8e-165 585.1 525 60.6
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 5.8e-165 585.1 526 60.8
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 5.8e-165 585.1 525 60.6
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 5.8e-165 585.1 526 60.8
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 7.6e-165 584.7 428 70.8
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.9e-163 580.1 516 61.2
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 4.2e-163 578.9 525 60.8
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 2.5e-160 569.7 413 71.7
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 2.2e-159 566.6 517 60.5
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 5.3e-158 562.0 517 60.0
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 5.3e-158 562.0 517 60.0
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.0e-157 560.1 514 59.3
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.0e-156 557.8 484 59.5
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 5.0e-156 555.4 536 58.6
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.1e-155 554.3 532 58.3
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 7.9e-154 548.1 368 75.8
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 6.3e-151 538.5 520 57.7
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 2.4e-150 536.6 527 56.4
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 3.3e-144 516.2 364 73.1
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 4.1e-142 509.2 540 52.8
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 5.3e-142 508.8 363 74.1
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.2e-140 503.4 539 52.7
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 7.5e-128 461.8 533 50.5
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 5.4e-126 455.7 415 60.5
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 6.8e-121 438.7 463 54.0
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 6.3e-119 432.2 354 63.8
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.4e-118 430.3 526 47.7
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.5e-112 411.0 348 64.1
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 3.4e-104 383.3 414 54.6
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 9.8e-96 355.1 309 64.1
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 6.8e-89 332.4 381 51.2
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.6e-85 321.2 326 58.0
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.2e-80 305.1 455 43.7
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.8e-71 273.5 253 58.1
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 7.1e-70 269.2 375 44.3
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 1.5e-59 235.0 300 44.7
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.1e-49 202.2 618 29.4
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.8e-49 201.4 156 67.3
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.1e-49 200.3 157 67.5
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.6e-45 188.3 128 71.1
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.6e-45 187.2 113 82.3
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.4e-41 174.5 152 56.6
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.0e-39 169.1 276 38.4
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 2.9e-39 167.5 136 67.6
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 9.7e-35 152.5 175 52.6
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 3.7e-34 150.6 133 57.9
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 1.4e-25 122.1 83 73.5
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.8e-25 121.7 75 80.0
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 1.2e-24 119.0 75 78.7
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 1.6e-24 118.6 97 62.9
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 2.0e-16 91.7 85 57.6
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 3.5e-16 90.9 83 53.0
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 2.9e-15 87.8 72 52.8
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 6.5e-15 86.7 159 35.2
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 1.2e-13 82.4 104 51.0
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 4.7e-13 80.5 50 78.0
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 4.0e-12 77.4 50 74.0
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 5.2e-12 77.0 51 70.6
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 7.5e-11 73.2 57 57.9
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 9.8e-11 72.8 67 52.2
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.8e-09 68.6 60 55.0
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 1.0e-07 62.8 48 64.6
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 1.5e-06 58.9 258 26.4


User provided reference genes

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