Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 5.0e-120 434.5 224 100.0
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.9e-87 326.2 207 78.3
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 6.4e-83 311.2 207 74.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 2.0e-76 289.7 225 66.7
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 4.4e-76 288.5 263 59.3
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 4.9e-75 285.0 234 62.8
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.7e-73 279.3 203 70.9
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 6.6e-72 274.6 207 64.7
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 8.6e-72 274.2 211 68.2
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 5.6e-71 271.6 204 67.6
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 7.3e-71 271.2 215 64.7
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.6e-70 270.0 212 65.6
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.1e-70 269.6 211 65.9
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 3.6e-70 268.9 203 68.5
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 8.1e-70 267.7 203 67.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.8e-69 266.5 214 64.0
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 2.3e-69 266.2 213 62.0
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 3.1e-69 265.8 214 63.1
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 4.0e-69 265.4 209 67.5
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 5.2e-69 265.0 214 64.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 2.6e-68 262.7 214 61.7
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.2e-67 259.6 207 66.7
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 3.7e-67 258.8 215 60.9
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 8.3e-67 257.7 207 62.8
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.2e-65 253.8 214 59.3
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.6e-65 253.4 215 60.9
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.6e-65 253.4 216 60.6
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.0e-64 250.8 214 61.2
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.3e-64 250.4 224 58.9
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.7e-64 250.0 214 60.7
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 8.6e-64 247.7 217 59.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 8.6e-64 247.7 215 61.9
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.5e-63 246.9 216 60.2
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-63 246.5 215 61.4
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 3.3e-63 245.7 216 61.6
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 3.3e-63 245.7 204 62.7
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 4.3e-63 245.4 216 59.7
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.6e-63 245.0 215 60.9
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.6e-63 245.0 215 60.9
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.6e-63 245.0 215 60.9
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.6e-63 245.0 215 60.9
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 9.5e-63 244.2 210 60.5
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.2e-62 243.8 170 70.0
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.1e-62 243.0 169 74.0
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 2.1e-62 243.0 215 58.6
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-62 243.0 215 60.9
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-62 243.0 215 60.5
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-62 243.0 215 60.5
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 2.8e-62 242.7 193 63.7
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.8e-62 242.7 215 59.5
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.8e-62 242.7 215 59.5
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-62 241.9 215 60.5
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.1e-62 241.1 215 60.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.1e-61 240.7 218 59.2
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.4e-61 240.4 214 61.2
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.3e-61 239.6 188 66.0
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.5e-60 236.9 221 57.5
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 2.6e-60 236.1 218 57.8
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 2.6e-60 236.1 264 53.0
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 7.6e-60 234.6 207 59.9
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 9.9e-60 234.2 218 56.9
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.3e-59 233.8 218 57.8
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.2e-59 233.0 205 61.0
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.2e-59 233.0 216 57.9
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 2.9e-59 232.6 218 56.4
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 6.4e-59 231.5 205 61.5
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 6.4e-59 231.5 210 56.2
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 6.4e-59 231.5 218 56.4
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 8.4e-59 231.1 218 56.0
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.1e-58 230.7 217 55.3
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.1e-58 230.7 254 53.9
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.9e-58 229.9 218 56.4
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 3.2e-58 229.2 215 57.7
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 3.2e-58 229.2 221 57.9
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 4.1e-58 228.8 212 55.7
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.1e-57 226.5 216 55.1
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.7e-57 226.1 214 57.0
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 6.0e-57 224.9 218 56.4
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.3e-56 223.0 185 65.4
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 6.6e-56 221.5 217 55.3
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 6.6e-56 221.5 211 57.3
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 8.6e-56 221.1 218 56.9
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 8.6e-56 221.1 219 53.9
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 8.6e-56 221.1 247 51.4
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-55 220.7 217 55.3
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.1e-55 220.7 203 55.7
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.9e-55 219.9 217 53.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.9e-55 219.9 217 55.8
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 3.3e-55 219.2 217 56.2
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 3.3e-55 219.2 216 55.6
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 4.3e-55 218.8 217 54.8
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 4.3e-55 218.8 217 56.2
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 7.3e-55 218.0 217 55.8
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 7.3e-55 218.0 220 55.0
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 9.6e-55 217.6 216 54.6
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.2e-54 217.2 217 54.8
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.2e-54 217.2 217 54.4
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.2e-54 217.2 216 54.2
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.2e-54 217.2 220 54.5
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.6e-54 216.9 183 60.1
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.1e-54 216.5 220 55.5
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 2.8e-54 216.1 216 55.1
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.7e-54 215.3 216 54.6
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 6.2e-54 214.9 216 54.6
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 6.2e-54 214.9 216 54.6
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.4e-53 213.8 196 58.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.8e-53 213.4 207 58.5
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.8e-53 213.4 189 59.8
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 3.1e-53 212.6 216 54.2
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 3.1e-53 212.6 196 58.2
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.1e-53 212.6 216 54.2
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 6.8e-53 211.5 229 51.5
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.2e-52 210.7 216 53.7
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 1.5e-52 210.3 231 52.4
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-52 209.9 198 59.1
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.4e-52 209.1 247 48.6
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 7.6e-52 208.0 225 52.4
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 4.9e-51 205.3 241 49.0
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.1e-50 201.4 179 60.3
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.0e-48 196.1 133 72.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.9e-47 193.4 191 54.5
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.8e-46 188.7 166 60.8
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 3.2e-42 176.0 134 69.4
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-41 173.7 150 62.7
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.3e-40 170.6 168 56.0
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 5.1e-40 168.7 341 35.2
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.9e-39 166.8 158 60.1
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.4e-37 160.6 194 51.0
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.3e-35 154.1 138 58.0
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.7e-35 153.7 112 70.5
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.5e-34 148.7 143 58.0
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.0e-32 144.4 145 55.9
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 8.7e-32 141.4 139 59.0
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 4.8e-30 135.6 152 54.6
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 6.2e-30 135.2 144 54.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 5.8e-28 128.6 175 46.3
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.9e-27 126.3 93 64.5
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.9e-27 126.3 165 44.8
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 8.4e-27 124.8 93 63.4
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.0e-24 117.9 111 55.9
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.0e-24 116.3 191 37.2
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 2.8e-22 109.8 88 61.4
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 6.3e-22 108.6 117 52.1
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.1e-21 106.3 172 38.4
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 5.3e-21 105.5 88 59.1
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 9.0e-21 104.8 140 45.0
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 3.9e-16 89.4 129 43.4
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.0e-12 77.0 57 57.9
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 5.0e-11 72.4 50 64.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.9e-08 62.8 54 57.4
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 2.8e-06 56.6 163 28.8


User provided reference genes

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