Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 2.0e-275 951.8 488 100.0
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 7.4e-177 624.4 489 68.1
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.0e-173 611.7 490 66.1
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.3e-159 565.1 490 62.7
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.5e-158 563.5 474 65.8
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 2.3e-154 549.7 498 59.0
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.7e-131 473.0 494 52.6
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 2.3e-130 469.9 491 51.7
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.3e-130 469.9 487 51.3
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.8e-127 460.3 496 50.6
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.2e-127 458.0 494 50.6
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.3e-125 454.1 472 51.9
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 2.3e-125 453.4 477 52.6
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 6.6e-125 451.8 479 51.6
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 6.6e-125 451.8 527 48.2
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.5e-124 450.7 501 48.9
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 2.5e-124 449.9 509 51.1
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 2.5e-124 449.9 489 50.9
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 3.6e-123 446.0 488 49.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 5.2e-122 442.2 486 52.1
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 8.9e-122 441.4 478 50.2
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.5e-121 440.7 488 49.4
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.3e-120 437.6 475 48.0
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 6.4e-120 435.3 475 48.6
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.4e-119 434.1 482 50.0
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.8e-119 433.7 540 44.8
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 9.2e-119 431.4 491 49.7
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 2.0e-118 430.3 489 49.1
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.0e-118 430.3 527 45.5
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 3.9e-117 426.0 479 48.9
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 5.0e-117 425.6 475 49.7
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 5.0e-117 425.6 498 47.8
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.5e-116 424.1 486 47.3
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.9e-116 423.7 481 47.6
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.9e-116 423.7 481 47.6
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 3.3e-116 422.9 490 47.6
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.6e-115 420.6 490 50.4
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.8e-114 417.2 476 47.1
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 3.1e-114 416.4 477 46.5
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 5.2e-114 415.6 477 47.0
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.2e-113 414.5 475 46.9
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.2e-113 414.5 552 45.7
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 2.6e-113 413.3 474 47.3
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 4.4e-113 412.5 487 48.7
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.7e-112 410.6 478 46.9
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.4e-111 407.5 390 54.6
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.4e-111 406.8 477 46.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 2.7e-110 403.3 538 43.3
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 3.5e-110 402.9 478 44.6
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 7.8e-110 401.7 478 44.4
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.7e-109 400.6 480 45.0
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 2.3e-109 400.2 488 45.5
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.3e-109 400.2 409 51.8
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 5.0e-109 399.1 487 47.0
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.1e-108 397.9 464 49.4
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.2e-107 394.4 513 44.1
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.6e-107 394.0 627 43.1
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 2.8e-107 393.3 410 50.7
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.1e-106 391.3 499 46.1
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.1e-106 391.3 336 58.0
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.8e-106 390.6 490 47.3
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 4.0e-106 389.4 486 44.2
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.2e-105 387.9 478 46.0
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 1.5e-105 387.5 482 44.8
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 5.8e-105 385.6 479 44.9
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 2.2e-104 383.6 424 48.3
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 6.4e-104 382.1 481 43.9
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 4.1e-103 379.4 487 46.2
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 7.1e-103 378.6 482 47.5
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 7.1e-103 378.6 579 39.2
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 7.1e-103 378.6 480 43.1
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 7.1e-103 378.6 470 45.1
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 9.2e-103 378.3 448 45.5
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 1.6e-102 377.5 587 39.9
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 7.8e-102 375.2 490 45.9
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.3e-101 374.4 487 44.1
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.3e-101 374.4 483 43.7
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 3.0e-101 373.2 494 46.4
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.9e-101 372.9 598 38.1
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 6.6e-101 372.1 486 44.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 8.6e-101 371.7 495 45.7
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 8.6e-101 371.7 311 57.2
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.5e-100 370.9 583 38.9
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.9e-100 370.5 488 44.1
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 5.6e-100 369.0 513 43.3
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.2e-99 367.9 489 43.1
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 3.6e-99 366.3 253 66.4
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 4.7e-99 365.9 513 43.7
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 6.8e-98 362.1 239 67.4
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.5e-97 360.9 239 67.4
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 4.4e-97 359.4 250 63.2
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 3.8e-96 356.3 486 43.4
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 4.9e-96 355.9 322 57.5
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 6.4e-96 355.5 507 42.4
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 8.4e-96 355.1 267 62.2
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.2e-94 351.3 488 42.6
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.3e-93 347.1 477 42.8
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.1e-92 344.7 471 41.8
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.8e-90 337.4 486 40.9
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 3.1e-90 336.7 326 54.3
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 8.9e-90 335.1 317 55.8
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 8.9e-90 335.1 251 62.9
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 2.2e-88 330.5 496 43.5
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.9e-87 327.4 317 54.3
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 2.7e-86 323.6 266 59.4
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.4e-82 310.5 452 42.7
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.9e-80 302.8 359 48.5
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.3e-77 294.7 382 47.1
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.1e-77 292.7 417 44.8
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.7e-77 292.4 476 38.0
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.6e-75 287.7 599 34.4
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.4e-74 284.6 431 40.6
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.8e-74 284.3 199 63.8
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 7.6e-73 278.9 471 38.4
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 3.2e-71 273.5 450 41.8
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 1.2e-70 271.6 507 34.3
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.8e-69 267.7 440 38.6
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 3.0e-69 266.9 249 52.2
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 3.0e-69 266.9 472 37.5
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 3.9e-69 266.5 248 53.2
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 6.2e-67 259.2 389 40.6
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.2e-65 255.0 480 35.0
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 9.3e-63 245.4 368 39.9
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 4.3e-60 236.5 384 40.6
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 4.6e-54 216.5 203 52.2
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.0e-48 198.7 299 43.1
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 7.9e-46 189.1 133 64.7
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.4e-41 173.7 218 44.5
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 3.4e-41 173.7 183 44.8
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.4e-34 151.8 126 56.3
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 4.1e-34 150.2 422 28.9
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.4e-26 124.4 169 41.4
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 7.7e-25 119.4 251 36.7
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.0e-24 119.0 158 41.1
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 3.8e-24 117.1 193 39.4
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-20 105.1 207 43.0
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 2.4e-18 97.8 73 60.3
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 2.7e-17 94.4 79 59.5
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.5e-17 93.6 194 36.1
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 7.7e-17 92.8 114 37.7
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 1.0e-16 92.4 64 60.9
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 1.9e-15 88.2 67 53.7
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 9.5e-15 85.9 74 51.4
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 4.0e-13 80.5 87 48.3
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.5e-12 78.6 95 48.4
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 5.7e-12 76.6 78 52.6
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.1e-10 72.4 194 35.1
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 4.3e-07 60.5 103 35.0
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.8e-06 57.8 80 45.0
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 2.8e-06 57.8 106 34.9


User provided reference genes

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