Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 0.0e+00 1734.9 864 100.0
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 0.0e+00 1220.3 829 73.2
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 0.0e+00 1198.0 831 72.4
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 0.0e+00 1191.0 842 72.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.9e-312 1073.9 759 70.1
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.4e-310 1068.1 815 64.9
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 7.6e-310 1067.0 826 65.3
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.2e-309 1065.4 823 66.7
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.0e-306 1056.6 826 64.6
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 5.7e-305 1050.8 830 64.3
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.8e-304 1048.5 826 63.9
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 2.4e-303 1045.4 826 63.8
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.4e-303 1045.4 826 63.8
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 6.5e-301 1037.3 826 63.4
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 1.6e-299 1032.7 834 62.4
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 3.0e-298 1028.5 825 63.3
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 2.8e-296 1021.9 825 61.6
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 6.3e-296 1020.8 796 65.2
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 8.2e-296 1020.4 829 62.4
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 3.1e-295 1018.5 814 63.4
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 2.6e-294 1015.4 819 62.5
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 4.5e-294 1014.6 826 62.5
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 5.9e-294 1014.2 827 62.2
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 1.0e-293 1013.4 819 62.6
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 8.5e-293 1010.4 829 61.6
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 4.2e-292 1008.1 827 63.0
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 5.5e-292 1007.7 828 62.7
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.9e-291 1003.8 827 62.0
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-290 1003.0 827 61.9
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.8e-290 1002.7 826 61.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 2.6e-289 998.8 796 62.1
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 5.7e-289 997.7 826 61.0
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 4.8e-288 994.6 795 61.3
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.9e-286 987.6 826 61.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 6.5e-285 984.2 848 58.6
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.9e-284 982.6 816 59.9
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.0e-282 976.9 727 66.9
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.4e-282 976.5 801 60.9
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.4e-282 976.5 799 61.7
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 4.4e-281 971.5 825 60.5
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 4.8e-280 968.0 798 61.4
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 8.2e-280 967.2 826 59.4
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 1.1e-279 966.8 797 61.2
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.4e-279 966.5 830 59.3
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 1.8e-279 966.1 825 59.4
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 2.4e-279 965.7 797 61.0
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.5e-278 961.8 712 67.3
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.9e-278 961.1 788 60.8
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 7.2e-276 954.1 790 60.6
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.2e-275 953.4 797 61.0
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.8e-274 949.5 826 59.2
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 2.3e-274 949.1 797 60.7
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 4.0e-274 948.3 879 56.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 6.7e-274 947.6 832 59.3
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 2.0e-273 946.0 825 59.2
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.3e-272 943.3 794 60.6
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.7e-272 943.0 827 59.4
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 2.4e-271 939.1 835 58.1
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.4e-271 939.1 829 58.0
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.4e-271 939.1 834 59.8
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 4.1e-271 938.3 797 60.0
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 7.0e-271 937.6 836 59.0
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.2e-270 936.8 796 58.9
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 4.5e-270 934.9 801 59.3
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 3.2e-268 928.7 797 59.7
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 2.1e-267 926.0 804 58.8
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 4.7e-267 924.9 838 57.6
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 2.6e-265 919.1 808 58.9
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 2.2e-264 916.0 839 56.9
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.7e-262 909.1 746 60.6
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 2.5e-260 902.5 809 56.9
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 5.2e-258 894.8 832 57.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 2.0e-257 892.9 829 56.1
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 2.0e-257 892.9 797 56.6
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 5.7e-257 891.3 802 57.4
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 9.8e-257 890.6 796 56.4
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.1e-255 887.1 797 56.1
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 5.4e-255 884.8 800 56.5
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 5.9e-254 881.3 796 56.2
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 8.6e-253 877.5 802 55.9
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 9.5e-252 874.0 801 55.7
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 2.1e-251 872.8 826 55.1
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 5.4e-247 858.2 931 50.4
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.8e-242 843.2 872 54.4
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.0e-238 829.7 794 54.0
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 6.8e-234 814.7 794 53.7
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.6e-227 793.5 605 64.8
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.6e-225 784.6 615 64.7
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.6e-225 784.6 615 64.7
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-217 760.8 620 63.1
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 5.8e-217 758.4 596 63.4
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 4.3e-212 742.3 758 52.2
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.4e-210 737.3 616 61.4
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 7.4e-196 688.3 801 46.2
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 4.8e-195 685.6 719 49.9
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 3.1e-194 682.9 620 56.8
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 4.2e-191 672.5 787 47.6
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 4.5e-185 652.5 721 48.1
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 7.2e-183 645.2 814 43.2
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 5.7e-156 555.8 546 54.9
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.0e-152 545.0 483 57.8
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 9.4e-151 538.5 413 63.7
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.1e-146 523.5 550 50.7
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 6.5e-144 515.8 392 66.8
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 3.6e-142 510.0 462 54.8
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 8.6e-128 462.2 789 36.6
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.6e-127 459.5 352 63.4
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.1e-125 453.8 352 62.8
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.5e-124 451.4 352 61.4
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.9e-123 447.2 394 58.1
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 4.4e-116 423.3 781 36.2
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 4.6e-113 413.3 776 35.4
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.0e-93 347.1 455 41.8
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 9.0e-93 345.9 474 44.9
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 5.3e-85 320.1 276 60.9
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 5.8e-84 316.6 240 62.1
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 9.6e-79 299.3 302 52.0
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.6e-70 271.9 380 45.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.8e-69 268.5 862 28.0
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.8e-69 268.5 183 66.1
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.5e-67 260.0 304 45.7
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.5e-67 260.0 320 42.8
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-58 232.3 210 55.7
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.2e-52 212.6 228 45.2
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.9e-51 208.0 143 65.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.1e-45 189.5 160 56.9
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.4e-45 189.1 176 58.0
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.9e-44 183.7 167 59.3
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.7e-43 182.2 232 49.6
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.2e-42 176.8 167 56.9
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.5e-39 169.1 212 45.3
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.5e-36 157.5 211 37.4
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.3e-35 156.0 131 59.5
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 2.2e-22 112.1 164 43.3
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 9.2e-21 106.7 868 21.8
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 5.6e-18 97.4 129 38.8
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 9.5e-10 70.1 336 22.6
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.1e-08 66.6 117 36.8
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.6e-07 62.0 43 65.1
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 2.2e-06 58.9 72 45.8
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 8.3e-06 57.0 36 66.7


User provided reference genes

Program Settings