Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1889.8 989 100.0
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1507.3 989 79.7
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1454.1 1035 77.0
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1417.1 983 76.5
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1404.4 990 76.5
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1315.4 1000 71.6
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1298.9 1008 70.6
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1298.1 1000 70.4
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1296.2 1000 70.9
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1293.9 1004 70.6
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1288.9 1005 69.2
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1284.6 1000 70.4
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1283.9 998 69.9
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1282.7 997 69.9
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1281.9 1059 66.3
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1276.9 998 70.0
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1270.4 997 69.6
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1264.2 994 68.9
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1264.2 998 69.7
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1263.8 1004 68.8
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 998 68.7
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 998 68.7
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1262.7 1000 68.5
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1262.3 1009 68.4
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 1002 68.4
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1260.0 1005 69.2
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1256.9 1005 69.2
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1256.1 996 69.8
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1255.7 996 69.0
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1255.4 1064 66.7
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1255.0 995 68.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1253.0 1056 67.0
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1253.0 1002 68.0
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1252.3 1045 66.4
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1251.9 1018 68.6
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1250.3 998 69.4
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1249.2 1032 66.7
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1248.0 1002 69.2
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1246.1 996 68.6
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1245.3 1003 67.5
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 993 67.6
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1244.6 993 67.7
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1244.6 1058 67.0
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 1037 66.2
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1239.6 1033 65.9
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1238.4 1011 68.1
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1237.6 1030 65.7
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1237.2 1007 68.9
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1232.6 999 68.0
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1231.1 1076 65.1
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1227.2 1053 66.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1026 65.2
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1044 65.5
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1223.8 1006 67.8
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1219.9 999 67.4
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 1005 67.7
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1217.2 1168 60.1
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1214.5 1000 67.3
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1213.7 996 66.3
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 1003 66.2
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1199.5 1023 65.0
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 1003 65.3
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 1003 65.3
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 994 65.8
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 1003 65.3
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 1004 65.1
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1186.8 1004 65.0
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1186.8 999 65.6
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 996 65.5
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1181.0 1001 65.1
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1179.5 999 65.6
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 1000 64.7
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1177.9 1003 64.6
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1167.9 993 65.0
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1163.7 998 64.6
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1163.3 989 64.3
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1159.1 988 64.8
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1147.5 1006 63.6
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1143.3 997 63.6
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1120.9 997 59.8
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1117.8 997 63.3
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1114.0 833 73.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1084.7 931 65.4
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1083.9 844 70.0
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1075.8 856 69.0
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 2.3e-310 1068.9 1012 58.7
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 1.8e-307 1059.3 1020 58.1
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 4.1e-307 1058.1 892 67.5
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 1.1e-291 1006.9 994 58.2
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.1e-285 986.9 761 70.3
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 4.0e-278 961.8 995 56.6
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.4e-269 931.8 1019 51.5
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 2.2e-268 929.5 1081 49.5
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 4.5e-266 921.8 1000 54.5
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 4.0e-262 908.7 1071 50.0
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 2.7e-258 896.0 1015 50.3
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.9e-227 793.5 713 61.9
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.0e-217 761.1 613 68.5
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 3.9e-209 732.6 826 53.0
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.9e-204 715.7 621 64.1
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 5.5e-203 712.2 956 48.1
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.3e-196 691.0 553 69.8
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 3.6e-178 629.8 688 54.7
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 6.1e-162 575.9 994 36.2
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 5.2e-161 572.8 572 57.0
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 3.5e-133 480.3 392 64.0
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 5.0e-132 476.5 362 65.5
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.6e-125 454.9 992 32.8
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 2.7e-125 454.1 274 84.7
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.8e-122 444.1 340 67.1
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.0e-121 440.3 310 70.3
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 5.8e-120 436.4 282 80.9
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 3.2e-118 430.6 274 78.8
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 6.8e-113 412.9 972 31.6
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 1.5e-112 411.8 291 71.5
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 2.2e-111 407.9 1306 28.6
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.4e-110 404.4 360 60.8
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 2.0e-96 358.2 348 54.3
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.3e-81 307.0 289 56.7
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.4e-78 298.9 168 88.7
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 8.7e-76 289.7 222 68.5
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.4e-70 272.3 241 59.8
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.2e-70 271.2 192 70.3
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 5.1e-68 263.8 145 91.7
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 9.7e-59 233.0 181 66.3
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-56 226.1 144 74.3
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.9e-54 218.8 205 61.0
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 3.2e-54 218.0 155 76.1
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.8e-49 202.2 129 73.6
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.2e-48 199.5 104 95.2
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.5e-48 198.0 129 72.9
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 1.1e-46 193.0 259 47.9
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 5.5e-46 190.7 214 53.7
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 2.8e-42 178.3 98 89.8
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 2.4e-41 175.3 161 59.6
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.4e-41 175.3 136 67.6
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 8.5e-39 166.8 122 71.3
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.1e-37 160.6 109 71.6
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 1.9e-30 139.0 203 45.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.4e-27 128.3 85 70.6
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.6e-24 117.9 170 40.0
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 5.0e-23 114.4 85 63.5
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 9.5e-22 110.2 139 48.2
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 6.6e-15 87.4 42 95.2
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.3e-07 62.4 45 73.3


User provided reference genes

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