Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 0.0e+00 1426.8 732 100.0
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 3.8e-286 988.0 715 70.1
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.0e-278 963.4 714 69.6
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.1e-272 943.3 710 69.2
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 5.5e-269 931.0 719 67.5
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 4.1e-264 914.8 729 65.7
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 6.1e-260 901.0 725 64.6
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.0e-259 900.2 725 64.4
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 5.2e-259 897.9 729 64.7
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 4.4e-258 894.8 714 65.3
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 5.4e-256 887.9 719 63.8
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 2.3e-254 882.5 716 64.7
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 1.9e-253 879.4 714 63.3
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 5.6e-253 877.9 714 64.1
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.2e-252 876.7 719 64.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.6e-252 876.3 728 63.9
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 3.6e-252 875.2 722 64.0
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 4.7e-252 874.8 719 62.9
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.0e-252 874.0 695 67.8
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.6e-250 869.0 724 63.3
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 8.3e-249 864.0 728 61.7
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 3.2e-248 862.1 722 61.5
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 2.7e-247 859.0 717 63.7
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.3e-246 855.9 719 62.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.5e-245 853.2 720 62.1
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 4.3e-245 851.7 718 62.8
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 2.8e-244 849.0 720 61.9
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.8e-244 849.0 720 61.9
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.8e-243 846.3 720 62.8
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-242 843.2 728 61.7
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 2.6e-242 842.4 719 62.6
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 3.4e-242 842.0 727 61.6
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 1.7e-241 839.7 720 62.1
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.7e-241 838.6 729 60.9
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 3.7e-241 838.6 717 61.6
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 4.9e-241 838.2 717 60.3
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 4.9e-241 838.2 721 62.3
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 3.2e-240 835.5 719 61.5
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 3.2e-240 835.5 720 59.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 3.2e-240 835.5 716 61.5
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 4.1e-240 835.1 729 60.8
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 4.1e-240 835.1 715 61.7
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 5.4e-240 834.7 722 62.2
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 2.7e-239 832.4 724 60.9
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.5e-239 832.0 717 61.8
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.5e-239 832.0 717 61.8
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.0e-238 830.5 715 61.7
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 3.0e-238 828.9 711 60.3
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 3.9e-238 828.6 715 61.5
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 6.6e-238 827.8 720 60.8
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.5e-237 826.6 754 60.2
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.5e-237 826.6 729 60.8
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 3.3e-237 825.5 717 60.7
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 3.3e-237 825.5 717 60.0
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 3.3e-237 825.5 717 61.5
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 4.3e-237 825.1 717 60.0
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 9.5e-237 823.9 728 60.0
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.5e-234 816.6 713 60.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 3.4e-234 815.5 740 59.2
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 5.8e-234 814.7 714 60.1
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 2.9e-233 812.4 719 60.5
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.1e-232 810.4 782 56.0
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 1.1e-232 810.4 754 58.0
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.0e-230 803.9 718 58.8
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.6e-229 798.1 719 59.7
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.1e-228 796.2 719 59.7
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 4.7e-228 795.0 712 60.0
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.7e-225 786.6 720 58.8
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 9.2e-224 780.8 709 58.0
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 9.2e-224 780.8 712 57.3
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 6.6e-222 774.6 714 56.6
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 3.3e-221 772.3 712 56.9
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.8e-220 769.2 717 56.1
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.5e-218 763.5 755 55.0
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 2.0e-218 763.1 712 56.9
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.7e-217 760.0 713 56.2
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 2.4e-216 756.1 708 57.2
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 9.3e-216 754.2 713 56.0
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 6.0e-215 751.5 713 55.7
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 1.1e-213 747.3 713 55.5
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 1.1e-213 747.3 658 60.6
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.1e-211 740.7 620 63.5
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 3.1e-211 739.2 967 46.3
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.2e-210 737.3 952 46.7
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 2.4e-208 729.6 723 54.2
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.2e-207 727.2 717 55.4
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.7e-207 726.1 717 55.4
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.0e-206 724.2 713 55.1
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 6.7e-206 721.5 734 54.6
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 2.8e-204 716.1 612 61.9
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 8.4e-201 704.5 723 56.2
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.0e-198 697.6 712 52.1
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.8e-198 696.8 829 48.6
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 6.9e-195 684.9 741 50.5
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 4.8e-188 662.1 732 51.2
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 9.7e-173 611.3 624 54.2
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.7e-172 610.5 518 62.4
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 1.7e-164 583.9 582 57.0
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.2e-164 581.6 574 57.3
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 4.8e-156 555.8 707 44.6
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 3.2e-152 543.1 755 43.8
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.7e-145 520.8 711 43.7
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 8.6e-145 518.5 758 41.6
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.9e-128 464.2 389 60.9
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 1.4e-118 431.4 406 56.2
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 9.9e-101 372.1 448 47.3
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.7e-97 359.0 404 48.0
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.1e-91 342.0 426 44.8
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.8e-89 334.7 419 44.4
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.8e-87 327.4 282 65.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.4e-86 325.1 329 54.1
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.5e-85 320.1 304 61.5
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.7e-81 305.8 269 62.5
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.6e-79 301.6 717 32.9
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 3.1e-70 270.8 985 25.8
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 3.6e-66 257.3 293 52.6
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 2.2e-63 248.1 250 58.4
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 4.4e-56 223.8 143 72.7
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 7.4e-56 223.0 153 69.9
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.2e-53 215.7 158 62.7
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 1.6e-53 215.3 386 38.3
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 5.9e-45 186.8 716 27.8
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 2.2e-44 184.9 201 50.2
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 6.8e-41 173.3 124 67.7
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.8e-39 167.9 264 36.0
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 8.0e-34 149.8 177 52.0
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 7.7e-29 133.3 295 38.6
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.2e-24 119.4 247 34.8
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.9e-23 114.8 107 57.0
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 9.2e-22 109.8 190 34.7
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 4.6e-21 107.5 120 55.0
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.8e-21 106.7 104 52.9
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 6.2e-18 97.1 73 67.1
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 3.5e-13 81.3 121 39.7
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.5e-08 65.9 192 29.7
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.9e-07 60.8 38 68.4
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 6.4e-07 60.5 133 24.1


User provided reference genes

Program Settings