Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.3e-185 652.9 330 100.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 8.3e-148 527.3 330 81.2
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.1e-144 516.9 331 80.4
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.5e-144 515.8 330 79.7
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.2e-143 511.1 334 79.3
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 3.4e-141 505.4 376 71.5
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 9.8e-141 503.8 334 77.5
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.4e-139 500.0 330 77.3
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 6.0e-138 494.6 331 76.1
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.7e-137 493.0 332 76.8
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.5e-136 489.2 330 76.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 2.8e-135 485.7 331 74.0
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 8.1e-135 484.2 332 75.0
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.6e-133 479.2 332 72.6
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.6e-133 479.2 333 73.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 4.4e-133 478.4 333 73.3
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 9.9e-133 477.2 333 73.9
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 9.9e-133 477.2 337 74.5
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.3e-132 476.9 330 74.2
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 8.3e-132 474.2 333 73.0
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.1e-131 473.8 333 73.0
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.9e-131 473.0 333 73.9
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.4e-131 472.6 333 73.6
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 2.4e-131 472.6 331 72.2
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 4.1e-131 471.9 333 74.8
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.6e-130 469.9 331 73.1
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 2.7e-130 469.2 330 73.0
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 3.5e-130 468.8 333 72.4
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.5e-130 468.8 331 71.9
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 3.5e-130 468.8 333 73.6
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 6.0e-130 468.0 339 74.0
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 7.8e-130 467.6 333 72.1
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.3e-129 466.8 331 71.6
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.7e-129 466.5 332 73.2
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 2.3e-129 466.1 332 72.6
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.1e-129 464.9 332 71.4
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 6.6e-129 464.5 334 71.9
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.1e-128 463.8 331 71.3
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.5e-128 463.4 337 73.6
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.5e-128 463.4 333 72.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.9e-128 463.0 333 70.9
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.3e-128 461.8 334 72.5
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 5.6e-128 461.5 338 73.1
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 9.5e-128 460.7 333 70.6
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.5e-128 460.7 339 72.0
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.5e-128 460.7 339 72.0
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 2.1e-127 459.5 330 71.2
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 6.2e-127 458.0 333 70.6
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 8.1e-127 457.6 332 71.7
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 8.1e-127 457.6 331 73.1
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.1e-126 457.2 333 70.6
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.4e-126 456.8 333 70.6
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 8.9e-126 454.1 338 71.6
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-125 453.4 333 70.0
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.9e-125 450.7 318 72.3
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 9.9e-125 450.7 334 70.4
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 4.9e-124 448.4 334 70.4
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.9e-124 448.4 336 69.6
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 4.9e-124 448.4 334 68.6
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.4e-124 447.6 333 69.4
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 8.4e-124 447.6 332 72.3
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.1e-123 447.2 338 71.6
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.9e-123 446.4 326 70.9
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.7e-122 442.6 336 70.8
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 3.5e-122 442.2 334 69.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 7.8e-122 441.0 331 68.0
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.3e-121 440.3 336 69.3
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.7e-121 439.9 334 69.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.7e-121 439.9 341 69.8
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 2.3e-121 439.5 337 69.1
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.9e-121 438.7 336 69.3
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 5.1e-121 438.3 335 69.3
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 5.1e-121 438.3 326 69.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 8.7e-121 437.6 334 69.2
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.5e-120 436.0 336 68.8
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 7.3e-120 434.5 329 67.2
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.1e-119 433.0 331 69.2
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.8e-118 429.9 328 69.2
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 3.1e-118 429.1 334 67.7
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 4.0e-118 428.7 330 67.6
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.0e-117 426.4 334 67.7
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.6e-117 426.0 324 69.8
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 3.4e-117 425.6 336 66.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 7.6e-117 424.5 342 67.8
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 2.2e-116 422.9 334 68.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.9e-116 422.5 325 68.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.9e-116 422.5 325 68.6
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.4e-116 421.4 329 65.0
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.4e-115 420.2 340 66.8
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.1e-114 416.4 347 66.6
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 4.6e-114 415.2 338 68.0
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.0e-113 414.1 329 65.3
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.0e-113 412.5 341 67.2
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.1e-113 411.8 331 65.3
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 6.6e-113 411.4 334 65.9
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.1e-112 410.6 338 65.4
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 7.3e-112 407.9 353 62.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.8e-110 403.3 334 65.0
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 5.8e-109 398.3 354 61.6
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 5.8e-109 398.3 354 61.6
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.3e-108 397.1 340 62.9
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.8e-105 386.7 355 62.8
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 5.6e-104 381.7 262 75.6
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 6.2e-103 378.3 332 60.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 8.1e-103 377.9 351 59.8
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 3.1e-102 375.9 351 59.0
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 4.5e-101 372.1 332 61.1
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.1e-99 367.5 341 58.7
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.9e-99 366.7 340 56.5
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 7.1e-99 364.8 357 60.2
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.6e-98 363.6 362 60.8
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 3.9e-97 359.0 331 58.9
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 5.7e-96 355.1 284 67.3
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.8e-95 352.1 332 56.3
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 2.0e-85 320.1 323 57.3
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.2e-82 310.8 322 57.1
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.7e-79 299.3 228 66.2
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 5.1e-73 278.9 211 68.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 6.7e-73 278.5 245 62.4
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 5.5e-67 258.8 351 45.9
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.1e-66 256.9 255 58.0
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 3.9e-65 252.7 267 58.1
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 4.8e-63 245.7 187 69.0
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.6e-61 240.0 379 43.0
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 5.9e-61 238.8 357 43.1
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 2.9e-60 236.5 185 67.6
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.2e-59 233.0 347 44.1
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 8.0e-58 228.4 352 43.2
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 3.5e-53 213.0 347 42.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 7.7e-53 211.8 216 56.5
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 8.3e-47 191.8 223 50.7
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 9.1e-46 188.3 366 38.0
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 3.8e-44 183.0 173 51.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.3e-36 157.9 373 33.8
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 5.8e-32 142.5 334 37.7
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 3.0e-28 130.2 371 32.9
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.4e-25 121.3 116 57.8
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 5.2e-25 119.4 146 47.9
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.2e-24 118.2 124 49.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-23 114.4 106 53.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 6.4e-23 112.5 85 65.9
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.4e-22 110.5 81 60.5
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 5.4e-22 109.4 125 48.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.7e-21 107.1 81 59.3
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.7e-18 96.3 101 55.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 3.1e-17 93.6 88 50.0
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 4.0e-17 93.2 55 76.4
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 9.9e-16 88.6 71 57.7
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-15 88.2 58 74.1
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.9e-15 87.0 333 28.2
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 7.1e-14 82.4 80 58.8
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.3e-12 78.2 41 85.4
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.8e-09 67.8 162 30.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 8.9e-09 65.5 43 69.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-07 61.6 53 50.9


User provided reference genes

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