Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 0.0e+00 1140.9 564 100.0
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1092.4 564 95.0
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1091.3 562 94.8
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 564 94.0
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 563 94.1
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 564 93.8
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 564 94.1
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 565 94.3
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 565 94.3
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 563 93.6
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 565 94.2
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 565 94.3
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1082.4 564 93.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 563 94.1
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 563 94.0
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 563 94.1
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 566 93.6
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 562 93.6
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 565 94.0
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 562 94.0
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 564 92.6
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 564 93.4
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 562 93.6
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 563 93.4
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 564 93.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 563 93.6
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 565 93.6
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 559 93.7
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 564 92.7
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 563 92.7
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 562 93.4
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 562 93.2
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 563 93.6
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.9e-312 1073.9 561 93.4
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 3.9e-312 1073.9 559 93.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 3.9e-312 1073.5 566 92.2
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 560 93.2
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 562 93.1
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 565 92.4
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 1.5e-311 1072.0 565 92.6
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 562 92.9
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 564 93.1
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 560 93.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 562 92.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 563 93.1
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 4.6e-311 1070.5 563 92.5
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 4.6e-311 1070.5 565 92.6
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 565 92.4
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 563 92.9
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 7.7e-311 1069.7 565 92.0
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 562 92.0
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 564 92.4
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 564 92.0
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 563 93.1
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 564 92.0
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 564 92.4
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 566 92.2
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 566 92.2
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 564 91.8
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 564 91.8
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 5.0e-310 1067.0 566 92.0
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 6.5e-310 1066.6 567 92.2
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 8.5e-310 1066.2 564 91.8
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 8.5e-310 1066.2 568 91.7
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 8.5e-310 1066.2 566 91.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 8.5e-310 1066.2 597 88.9
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.1e-309 1065.8 562 92.3
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 581 89.7
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 564 91.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 564 91.5
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 560 92.3
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 562 91.5
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 567 91.2
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 562 90.9
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 7.9e-308 1059.7 559 92.1
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 7.9e-308 1059.7 568 91.4
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 558 90.9
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 571 91.6
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 3.9e-307 1057.4 564 91.5
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 9.7e-306 1052.7 619 84.8
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.7e-305 1052.0 599 87.6
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.7e-305 1052.0 553 92.9
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 4.8e-305 1050.4 572 90.6
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 565 90.4
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 594 87.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.8e-302 1040.8 560 91.1
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 6.7e-299 1030.0 575 89.7
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 5.7e-298 1026.9 521 95.8
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 4.8e-297 1023.8 555 87.6
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 557 86.9
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 557 86.9
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 5.0e-294 1013.8 562 87.0
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.7e-289 997.7 561 88.4
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 4.1e-288 994.2 539 87.8
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 9.1e-288 993.0 521 92.3
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 5.6e-277 957.2 496 93.3
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 9.5e-277 956.4 489 93.7
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 6.4e-265 917.1 456 96.1
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.9e-264 915.6 564 81.9
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 9.5e-261 903.3 540 79.8
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.3e-246 856.3 543 76.6
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.6e-244 848.2 564 77.3
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.0e-238 830.1 566 77.0
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 4.8e-236 821.2 408 96.3
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 8.4e-233 810.4 420 94.0
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 7.4e-229 797.3 528 77.7
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.3e-228 796.6 564 73.8
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 9.9e-226 786.9 523 77.6
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.4e-224 782.3 523 77.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.5e-223 778.5 504 76.0
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.3e-222 775.8 561 72.9
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 6.9e-219 764.2 564 72.3
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.1e-216 756.9 389 94.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.3e-206 723.4 553 67.1
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.5e-194 683.3 502 71.5
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 3.3e-189 665.6 331 96.1
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.2e-170 604.0 312 91.7
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 8.9e-158 561.2 511 60.5
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.8e-150 535.0 555 55.9
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.3e-145 520.8 262 95.0
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.7e-138 496.5 462 58.2
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.3e-136 489.2 300 82.0
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.7e-129 467.2 258 90.3
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.3e-129 466.8 504 53.8
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 6.6e-129 465.3 293 80.2
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 2.6e-125 453.4 567 49.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-124 450.7 385 63.1
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 6.4e-124 448.7 563 49.2
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-122 444.5 373 61.7
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.2e-115 419.9 237 89.5
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.3e-113 413.7 350 63.1
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.8e-108 396.4 196 94.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-98 363.6 246 75.6
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.9e-97 359.8 267 69.7
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.3e-95 352.4 214 79.9
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.8e-92 343.2 167 97.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-91 341.7 183 85.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 7.2e-91 339.0 300 64.0
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.4e-86 323.9 154 98.7
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-85 320.9 321 59.2
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.9e-83 314.3 160 91.9
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.3e-81 307.4 158 93.0
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 2.6e-69 267.3 176 79.0
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.6e-66 256.9 159 81.1
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.6e-66 256.9 152 84.9
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-52 211.8 123 86.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.0e-49 202.2 133 78.2
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.1e-46 192.2 105 87.6
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.3e-44 185.3 277 43.7
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 8.6e-44 182.6 138 67.4
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-43 180.3 113 81.4
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 4.0e-33 147.1 98 77.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 8.6e-28 129.4 143 53.8
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-27 129.0 75 86.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 6.8e-25 119.8 73 84.9
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-21 109.0 55 94.5
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 6.0e-21 106.7 86 68.6
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 9.6e-19 99.4 58 82.8
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 8.9e-17 92.8 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.9e-15 87.8 52 82.7
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.8e-15 87.4 88 60.2
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-14 85.9 44 86.4
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-14 84.0 59 69.5
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.6e-13 82.0 49 81.6
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 4.8e-10 70.5 60 68.3
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 8.1e-10 69.7 49 75.5


User provided reference genes

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