Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 2.7e-200 701.8 363 100.0
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 8.8e-159 563.9 340 85.3
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 1.9e-153 546.2 361 78.9
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 2.2e-149 532.7 342 78.1
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 6.3e-141 504.6 344 77.3
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 1.9e-137 493.0 342 76.0
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 6.1e-136 488.0 332 76.5
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 4.0e-135 485.3 342 71.9
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 5.2e-135 485.0 342 71.1
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 5.2e-135 485.0 342 72.5
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 2.6e-134 482.6 348 71.6
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 6.4e-133 478.0 342 71.1
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 1.4e-132 476.9 342 70.8
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 3.2e-132 475.7 342 71.6
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 4.1e-132 475.3 342 71.6
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.2e-131 473.8 342 72.2
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 2.0e-131 473.0 346 69.9
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 2.0e-131 473.0 343 72.0
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 2.0e-131 473.0 346 72.0
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 2.7e-131 472.6 342 72.2
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 6.0e-131 471.5 352 68.8
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.3e-130 470.3 342 70.8
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 1.7e-130 469.9 342 69.9
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 1.7e-130 469.9 342 71.6
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 5.0e-130 468.4 344 70.3
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 8.6e-130 467.6 342 70.5
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 1.1e-129 467.2 342 69.9
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 3.3e-129 465.7 342 70.2
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 7.3e-129 464.5 342 69.6
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.2e-128 463.8 342 69.6
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 1.2e-128 463.8 342 69.6
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 1.6e-128 463.4 342 71.3
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 3.6e-128 462.2 358 66.2
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 8.0e-128 461.1 342 69.9
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 1.1e-127 460.7 342 69.0
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.1e-127 460.7 342 70.2
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 1.1e-127 460.7 342 69.3
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 2.3e-127 459.5 343 69.1
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 3.1e-127 459.1 342 68.7
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 3.1e-127 459.1 342 69.0
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 3.1e-127 459.1 342 69.6
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 4.0e-127 458.8 342 69.9
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 6.8e-127 458.0 342 67.8
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.0e-126 456.4 342 68.1
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 2.6e-126 456.1 342 69.0
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 7.5e-126 454.5 342 68.1
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 1.7e-125 453.4 342 67.8
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 2.9e-125 452.6 342 67.5
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 3.7e-125 452.2 342 69.6
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 4.9e-125 451.8 342 65.8
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 1.1e-124 450.7 354 67.5
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 1.4e-124 450.3 342 67.8
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 1.4e-124 450.3 342 67.5
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 3.2e-124 449.1 357 64.1
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 3.2e-124 449.1 342 67.0
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 4.1e-124 448.7 342 68.1
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 4.1e-124 448.7 342 67.5
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 5.4e-124 448.4 342 68.4
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.6e-123 446.8 342 69.0
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 1.6e-123 446.8 342 66.7
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 3.5e-123 445.7 342 66.1
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 4.6e-123 445.3 342 68.7
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 7.8e-123 444.5 342 67.3
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 2.3e-122 443.0 342 66.1
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 3.0e-122 442.6 342 65.8
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 3.9e-122 442.2 348 67.0
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 3.9e-122 442.2 342 65.2
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 6.6e-122 441.4 342 65.5
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 6.6e-122 441.4 342 65.2
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 8.6e-122 441.0 342 65.8
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 1.1e-121 440.7 342 65.5
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 1.5e-121 440.3 342 65.5
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 1.9e-121 439.9 342 65.5
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.9e-121 439.9 359 64.6
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 3.3e-121 439.1 342 65.5
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 3.3e-121 439.1 344 66.9
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 5.6e-121 438.3 342 65.2
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 7.3e-121 438.0 359 64.3
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 2.1e-120 436.4 342 66.1
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 2.8e-120 436.0 342 64.0
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 3.6e-120 435.6 342 64.9
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 8.1e-120 434.5 342 64.3
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 8.1e-120 434.5 342 64.6
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 1.8e-119 433.3 342 64.0
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 4.0e-119 432.2 342 64.3
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 8.9e-119 431.0 342 64.0
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 2.6e-118 429.5 342 65.5
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 9.9e-118 427.6 344 64.5
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 1.7e-117 426.8 342 64.3
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 3.7e-117 425.6 342 66.1
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 4.9e-117 425.2 342 66.4
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 6.4e-117 424.9 342 64.9
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 2.4e-116 422.9 342 63.2
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 2.4e-116 422.9 342 63.2
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 2.4e-116 422.9 344 64.5
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 2.4e-116 422.9 342 65.5
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 4.6e-115 418.7 342 64.9
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 2.5e-113 412.9 342 62.6
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 4.3e-113 412.1 342 64.3
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 2.8e-112 409.5 342 64.0
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 4.7e-112 408.7 346 62.4
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 3.4e-110 402.5 349 63.6
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 3.4e-110 402.5 405 56.5
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 8.4e-109 397.9 342 62.6
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 8.4e-109 397.9 359 60.2
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 4.1e-108 395.6 347 59.1
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 9.2e-108 394.4 343 59.5
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 9.2e-108 394.4 343 59.5
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 1.0e-106 391.0 343 63.0
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 1.6e-104 383.6 342 60.8
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 7.6e-102 374.8 344 59.6
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 2.9e-101 372.9 266 71.8
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.4e-101 371.7 355 58.6
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 8.4e-101 371.3 342 57.9
Hma1.2p1_1132F.1_g260350 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 4.8e-96 355.5 236 76.3
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 3.2e-92 342.8 342 53.5
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 2.7e-91 339.7 342 53.2
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 4.6e-91 339.0 342 55.8
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 4.6e-91 339.0 343 55.7
Zm00001eb105020 Zea mays HOM05D004509 ORTHO05D005568 1.1e-89 334.3 340 54.1
Os07g0484300 Oryza sativa ssp. japonica HOM05D004509 ORTHO05D005568 3.4e-86 322.8 292 57.9
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 2.9e-85 319.7 260 63.5
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 2.4e-84 316.6 350 52.9
Mapoly0141s0003 Marchantia polymorpha HOM05D004509 ORTHO05D005568 7.1e-84 315.1 343 50.7
Mapoly0259s0001 Marchantia polymorpha HOM05D004509 ORTHO05D005568 7.1e-84 315.1 343 50.7
SMO298G0006 Selaginella moellendorffii HOM05D004509 ORTHO05D005568 1.8e-82 310.5 293 56.3
Zm00001eb321470 Zea mays HOM05D004509 ORTHO05D005568 2.3e-82 310.1 343 52.2
Pp3c3_10340 Physcomitrium patens HOM05D004509 ORTHO05D005568 6.7e-82 308.5 342 48.8
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.8e-79 300.4 342 48.2
Pp3c13_9770 Physcomitrium patens HOM05D004509 ORTHO05D005568 7.6e-78 295.0 338 48.2
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 6.5e-77 292.0 201 70.6
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 8.2e-72 275.0 207 66.7
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 5.9e-70 268.9 278 52.2
arahy.Tifrunner.gnm1.ann1.WP6JS3 Arachis hypogaea HOM05D004509 ORTHO05D005568 2.5e-65 253.4 248 59.7
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 6.1e-59 232.3 222 56.3
BcaC07g38179 Brassica carinata HOM05D004509 ORTHO05D005568 1.4e-58 231.1 175 66.3
BcaNung06355 Brassica carinata HOM05D004509 ORTHO05D005568 6.3e-56 222.2 209 57.9
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.8e-55 220.7 166 65.1
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 1.8e-55 220.7 348 40.8
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 2.6e-54 216.9 169 66.3
SEGI_41248 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 3.2e-52 209.9 226 51.8
ClCG09G013190 Citrullus lanatus HOM05D004509 ORTHO05D005568 3.0e-42 176.8 183 53.6
Cpa.g.sc3.319 Carica papaya HOM05D004509 ORTHO05D005568 3.3e-41 173.3 100 83.0
ClCG09G013200 Citrullus lanatus HOM05D004509 ORTHO05D005568 4.7e-35 152.9 100 77.0
SEGI_07953 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 3.0e-34 150.2 137 57.7
CBR_g4830 Chara braunii HOM05D004509 ORTHO05D005568 3.8e-29 133.3 302 30.8
unitig_52.g17762 Utricularia gibba HOM05D000486 ORTHO05D000375 2.1e-27 127.5 111 57.7
EL10Ac1g01861 Beta vulgaris HOM05D004509 ORTHO05D005568 1.3e-24 118.2 191 42.9
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 2.2e-24 117.5 342 29.5
SEGI_31032 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 8.3e-24 115.5 82 64.6
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 3.5e-22 110.2 107 58.9
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 3.5e-22 110.2 107 58.9
QL05p008713 Quercus lobata HOM05D004509 ORTHO05D023994 4.3e-12 76.6 81 53.1
MCO15G602 Micromonas commoda HOM05D003872 ORTHO05D004592 8.0e-11 72.4 288 26.4
SEGI_15145 Sequoiadendron giganteum HOM05D003872 ORTHO05D004592 6.4e-08 62.8 322 23.0
ATR0743G218 Amborella trichopoda HOM05D003872 ORTHO05D004592 5.4e-07 59.7 303 23.1
SMO116G0390 Selaginella moellendorffii HOM05D003872 ORTHO05D004592 5.4e-07 59.7 303 22.4
MBI04_g36030_MAGBIO Magnolia biondii HOM05D003872 ORTHO05D004592 1.2e-06 58.5 305 25.6
BcaC07g38178 Brassica carinata HOM05D004509 ORTHO05D023994 3.5e-06 57.0 77 42.9
PSO063G1286 Papaver somniferum HOM05D003872 ORTHO05D004592 4.6e-06 56.6 269 23.0
Cc02_g00340 Coffea canephora HOM05D003872 ORTHO05D004592 6.0e-06 56.2 296 22.0
Manes.08G162800 Manihot esculenta HOM05D003872 ORTHO05D004592 6.0e-06 56.2 301 23.9
Carub.0002s1027 Capsella rubella HOM05D003872 ORTHO05D004592 7.8e-06 55.8 302 24.2
Mapoly0001s0157 Marchantia polymorpha HOM05D003872 ORTHO05D004592 7.8e-06 55.8 307 23.5


User provided reference genes

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