Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04058 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.5e-37 159.1 81 100.0
Hund29038 Selenicereus undatus HOM05D001987 ORTHO05D004018 6.3e-33 143.7 110 73.6
Hund26845 Selenicereus undatus HOM05D001987 ORTHO05D004018 9.2e-32 139.8 120 67.5
EL10As12g24036 Beta vulgaris HOM05D001987 ORTHO05D004018 5.6e-29 130.6 120 63.3
Ah.10g027330 Amaranthus hybridus HOM05D001987 ORTHO05D004018 7.3e-29 130.2 120 62.5
Ah.10g027450 Amaranthus hybridus HOM05D001987 ORTHO05D004018 7.3e-29 130.2 120 62.5
Ah.10g028990 Amaranthus hybridus HOM05D001987 ORTHO05D004018 7.3e-29 130.2 120 62.5
EL10Ac5g11671 Beta vulgaris HOM05D001987 ORTHO05D004018 1.6e-28 129.0 120 62.5
Gohir.1Z049902 Gossypium hirsutum HOM05D001987 ORTHO05D004018 8.0e-28 126.7 120 60.8
Medtr1779s0010 Medicago truncatula HOM05D001987 ORTHO05D004018 8.0e-28 126.7 120 60.8
QL93p1043_0023 Quercus lobata HOM05D001987 ORTHO05D004018 1.8e-27 125.6 119 59.7
Gohir.A12G024600 Gossypium hirsutum HOM05D001987 ORTHO05D004018 3.0e-27 124.8 119 59.7
Sc25g0002060 Simmondsia chinensis HOM05D001987 ORTHO05D004018 3.0e-27 124.8 120 60.8
Ciclev10024383m.g Citrus clementina HOM05D001987 ORTHO05D004018 4.0e-27 124.4 99 66.7
MELO3C000108.2 Cucumis melo HOM05D001987 ORTHO05D004018 4.0e-27 124.4 120 60.0
Lalb_Chr03g0039341 Lupinus albus HOM05D001987 ORTHO05D004018 1.2e-26 122.9 120 59.2
Gohir.A12G178655 Gossypium hirsutum HOM05D001987 ORTHO05D004018 2.0e-26 122.1 117 59.8
HanXRQChr00c0349g0573951 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr00c0557g0575721 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr00c0593g0576391 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr01g0020191 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr04g0127461 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr10g0284411 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr10g0318031 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr11g0321121 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr11g0326991 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQChr12g0369881 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
HanXRQCPg0580211 Helianthus annuus HOM05D001987 ORTHO05D004018 2.0e-26 122.1 120 59.2
Sed0015467 Sechium edule HOM05D001987 ORTHO05D004018 2.6e-26 121.7 120 58.3
PGR111G0010 Punica granatum HOM05D001987 ORTHO05D004018 3.4e-26 121.3 120 59.2
Migut.D01329 Erythranthe guttata HOM05D001987 ORTHO05D004018 5.7e-26 120.6 120 58.3
SGA_v2.0_scaffold3325G54315 Striga asiatica HOM05D001987 ORTHO05D004018 7.5e-26 120.2 119 58.0
Nn002s41363 Nelumbo nucifera HOM05D001987 ORTHO05D004018 9.8e-26 119.8 120 57.5
arahy.Tifrunner.gnm1.ann1.4JG1UT Arachis hypogaea HOM05D001987 ORTHO05D004018 1.3e-25 119.4 118 58.5
arahy.Tifrunner.gnm1.ann1.E2JJBF Arachis hypogaea HOM05D001987 ORTHO05D004018 1.3e-25 119.4 118 58.5
DCAR_032523 Daucus carota HOM05D001987 ORTHO05D004018 1.3e-25 119.4 120 58.3
LjContig00318g0015359 Lotus japonicus HOM05D001987 ORTHO05D004018 1.7e-25 119.0 120 56.7
unitig_91.g26513 Utricularia gibba HOM05D001987 ORTHO05D004018 1.7e-25 119.0 120 57.5
HanXRQChr16g0530211 Helianthus annuus HOM05D001987 ORTHO05D004018 2.2e-25 118.6 120 57.5
Lj2C1237T35 Lonicera japonica HOM05D001987 ORTHO05D004018 2.2e-25 118.6 120 56.7
Solyc00g500032.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 2.2e-25 118.6 118 58.5
Solyc00g500077.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 2.2e-25 118.6 118 58.5
TAR375G0860 Trochodendron aralioides HOM05D001987 ORTHO05D004018 6.4e-25 117.1 120 56.7
RcHm_v2.0_Chr2g0118571 Rosa chinensis HOM05D001987 ORTHO05D004018 8.3e-25 116.7 118 57.6
Solyc00g500154.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 5.4e-24 114.0 115 57.4
Solyc09g050065.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 7.0e-24 113.6 116 56.9
AL1G67310 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 1.2e-23 112.8 118 55.1
AL2G20540 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 1.2e-23 112.8 118 55.1
ATCG00790 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 1.2e-23 112.8 118 55.1
BolSC29t60531H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-23 112.5 118 55.1
BolSC29t60612H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-23 112.5 118 55.1
BolSC35t60672H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-23 112.5 118 55.1
BolSC49t61161H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-23 112.5 118 55.1
RcHm_v2.0_Chr5g0031171 Rosa chinensis HOM05D001987 ORTHO05D004018 3.5e-23 111.3 120 53.3
PSO548G0086 Papaver somniferum HOM05D001987 ORTHO05D004018 5.9e-23 110.5 118 55.1
Nitab4.5_0007104g0030 Nicotiana tabacum HOM05D001987 ORTHO05D004018 2.3e-22 108.6 118 52.5
FvH4_3g18440 Fragaria vesca HOM05D001987 ORTHO05D004018 3.0e-22 108.2 120 51.7
FAN16G3148 Fragaria x ananassa HOM05D001987 ORTHO05D004018 3.0e-22 108.2 120 51.7
FAN21G1218 Fragaria x ananassa HOM05D001987 ORTHO05D004018 3.9e-22 107.8 120 50.8
FAN25G2706 Fragaria x ananassa HOM05D001987 ORTHO05D004018 3.9e-22 107.8 120 50.8
Medtr4g034750 Medicago truncatula HOM05D001987 ORTHO05D004018 3.9e-22 107.8 118 53.4
Ciclev10021160m.g Citrus clementina HOM05D001987 ORTHO05D004018 6.6e-22 107.1 119 51.3
Psat0s1446g0200 Pisum sativum HOM05D001987 ORTHO05D004018 6.6e-22 107.1 118 51.7
FAN11G2273 Fragaria x ananassa HOM05D001987 ORTHO05D004018 8.6e-22 106.7 120 50.8
Hund28045 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.1e-21 106.3 119 55.5
Gorai.004G166700 Gossypium raimondii HOM05D001987 ORTHO05D004018 5.6e-21 104.0 110 55.5
Gohir.D01G102151 Gossypium hirsutum HOM05D001987 ORTHO05D004018 9.5e-21 103.2 111 55.0
ATR0424G001 Amborella trichopoda HOM05D001987 ORTHO05D004018 1.2e-20 102.8 116 52.6
Gohir.D01G157901 Gossypium hirsutum HOM05D001987 ORTHO05D004018 1.2e-20 102.8 95 61.1
BraSC58t46443Z Brassica rapa HOM05D001987 ORTHO05D004018 2.1e-20 102.1 120 53.3
Hund10099 Selenicereus undatus HOM05D001987 ORTHO05D004018 2.1e-20 102.1 98 60.2
Gorai.002G196000 Gossypium raimondii HOM05D001987 ORTHO05D004018 3.6e-20 101.3 96 60.4
Gohir.1Z049934 Gossypium hirsutum HOM05D001987 ORTHO05D004018 4.7e-20 100.9 105 56.2
Hund29684 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.4e-19 99.4 101 61.4
Haze_16657 Corylus avellana HOM05D001987 ORTHO05D004018 2.3e-19 98.6 118 46.6
Atru.chr11.441 Acer truncatum HOM05D001987 ORTHO05D004018 5.2e-19 97.4 106 57.5
SEGI_15837 Sequoiadendron giganteum HOM05D001987 ORTHO05D004018 1.5e-18 95.9 120 49.2
Nn1g01958 Nelumbo nucifera HOM05D001987 ORTHO05D004018 2.6e-18 95.1 87 62.1
Thhalv10018971m.g Eutrema salsugineum HOM05D001987 ORTHO05D004018 7.5e-18 93.6 118 49.2
EL10As9g23923 Beta vulgaris HOM05D000964 ORTHO05D001488 1.7e-17 92.4 45 95.6
SalBow6G6095 Salvia bowleyana HOM05D001987 ORTHO05D004018 1.7e-17 92.4 109 48.6
Medtr0002s0780 Medicago truncatula HOM05D001987 ORTHO05D004018 2.2e-17 92.0 107 51.4
Psat6g191040 Pisum sativum HOM05D001987 ORTHO05D004018 2.9e-17 91.7 117 47.0
Sed0005999 Sechium edule HOM05D001987 ORTHO05D004018 2.9e-17 91.7 45 93.3
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 2.9e-17 91.7 45 93.3
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 2.9e-17 91.7 45 93.3
AL4G23360 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 3.7e-17 91.3 117 47.9
Haze_07953 Corylus avellana HOM05D001987 ORTHO05D004018 3.7e-17 91.3 118 44.1
Os11g0269100 Oryza sativa ssp. japonica HOM05D001987 ORTHO05D004018 3.7e-17 91.3 114 49.1
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 4.9e-17 90.9 45 93.3
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 4.9e-17 90.9 45 93.3
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 4.9e-17 90.9 45 93.3
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 4.9e-17 90.9 45 93.3
CiPaw.03G280800 Carya illinoinensis HOM05D001987 ORTHO05D004018 6.4e-17 90.5 114 47.4
Hma1.2p1_0298F.1_g117750 Hydrangea macrophylla HOM05D000964 ORTHO05D001488 8.3e-17 90.1 63 71.4
Hma1.2p1_0818F.1_g223309 Hydrangea macrophylla HOM05D000964 ORTHO05D001488 8.3e-17 90.1 63 71.4
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 1.1e-16 89.7 45 91.1
Gohir.A05G396300 Gossypium hirsutum HOM05D001987 ORTHO05D004018 1.4e-16 89.4 45 91.1
Ciclev10004001m.g Citrus clementina HOM05D001987 ORTHO05D004018 1.9e-16 89.0 45 91.1
Lsat_1_v5_gn_0_41580 Lactuca sativa HOM05D000964 ORTHO05D001488 1.9e-16 89.0 45 91.1
Lsat_1_v5_gn_5_50441 Lactuca sativa HOM05D000964 ORTHO05D001488 1.9e-16 89.0 45 91.1
Lsat_1_v5_gn_6_69081 Lactuca sativa HOM05D000964 ORTHO05D001488 1.9e-16 89.0 45 91.1
SMO086G0056 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 2.4e-16 88.6 116 47.4
A07p38510 Brassica napus HOM05D001987 ORTHO05D004018 3.2e-16 88.2 118 42.4
BraA07t31411Z Brassica rapa HOM05D001987 ORTHO05D004018 3.2e-16 88.2 118 42.4
arahy.Tifrunner.gnm1.ann1.MWRF4M Arachis hypogaea HOM05D001987 ORTHO05D004018 5.4e-16 87.4 45 88.9
VMungo0576G0001 Vigna mungo HOM05D000964 ORTHO05D001488 5.4e-16 87.4 45 88.9
BcaB03g14981 Brassica carinata HOM05D001987 ORTHO05D004018 9.2e-16 86.7 118 41.5
BcaC08g46689 Brassica carinata HOM05D001987 ORTHO05D004018 9.2e-16 86.7 118 41.5
C06p46690 Brassica napus HOM05D001987 ORTHO05D004018 9.2e-16 86.7 118 41.5
Cpa.g.sc0.195 Carica papaya HOM05D000964 ORTHO05D001488 9.2e-16 86.7 63 65.1
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.2e-15 86.3 105 50.5
ClCG00G004300 Citrullus lanatus HOM05D001987 ORTHO05D004018 1.2e-15 86.3 43 90.7
HanXRQChr15g0486801 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-15 86.3 68 61.8
arahy.Tifrunner.gnm1.ann1.82YIJR Arachis hypogaea HOM05D001987 ORTHO05D004018 1.6e-15 85.9 45 86.7
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 1.6e-15 85.9 45 86.7
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 1.6e-15 85.9 45 86.7
PSO675G5880 Papaver somniferum HOM05D001987 ORTHO05D004018 1.6e-15 85.9 117 41.9
PSO675G6514 Papaver somniferum HOM05D001987 ORTHO05D004018 1.6e-15 85.9 117 41.9
Peaxi162Scf00299g00014 Petunia axillaris HOM05D000964 ORTHO05D004018 1.6e-15 85.9 45 88.9
Aqoxy5G00594 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 2.0e-15 85.5 116 44.0
arahy.Tifrunner.gnm1.ann1.T14CIR Arachis hypogaea HOM05D001987 ORTHO05D004018 2.7e-15 85.1 45 86.7
Gohir.D08G014666 Gossypium hirsutum HOM05D001987 ORTHO05D004018 2.7e-15 85.1 45 86.7
HanXRQChr17g0554541 Helianthus annuus HOM05D001987 ORTHO05D004018 2.7e-15 85.1 52 80.8
AT2G28815 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 4.6e-15 84.3 117 47.0
C02p60180 Brassica napus HOM05D000964 ORTHO05D001488 4.6e-15 84.3 45 86.7
BraA06t25385Z Brassica rapa HOM05D000964 ORTHO05D001488 4.6e-15 84.3 45 86.7
BraSC103t45444Z Brassica rapa HOM05D000964 ORTHO05D001488 4.6e-15 84.3 45 86.7
BraSC138t45552Z Brassica rapa HOM05D000964 ORTHO05D001488 4.6e-15 84.3 45 86.7
BraSC59t46569Z Brassica rapa HOM05D000964 ORTHO05D001488 4.6e-15 84.3 45 86.7
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 4.6e-15 84.3 45 84.4
arahy.Tifrunner.gnm1.ann1.1EZ6RQ Arachis hypogaea HOM05D000964 ORTHO05D001488 6.0e-15 84.0 63 66.7
Carub.0004s0981 Capsella rubella HOM05D001987 ORTHO05D004018 6.0e-15 84.0 118 43.2
Nitab4.5_0006096g0020 Nicotiana tabacum HOM05D000923 ORTHO05D000720 2.3e-14 82.0 45 84.4
CARHR127990 Cardamine hirsuta HOM05D001987 ORTHO05D004018 3.0e-14 81.6 115 42.6
Hund30390 Selenicereus undatus HOM05D001987 ORTHO05D004018 3.9e-14 81.3 117 42.7
Hund30392 Selenicereus undatus HOM05D001987 ORTHO05D004018 3.9e-14 81.3 117 42.7
BolSC29t60628H Brassica oleracea HOM05D001987 ORTHO05D004018 2.5e-13 78.6 44 81.8
EL10Ac4g10036 Beta vulgaris HOM05D001987 ORTHO05D004018 5.6e-13 77.4 117 41.0
Psat3g190880 Pisum sativum HOM05D001987 ORTHO05D004018 5.6e-13 77.4 45 77.8
Ah.06g195180 Amaranthus hybridus HOM05D001987 ORTHO05D004018 7.3e-13 77.0 117 40.2
Mapoly0052s0079 Marchantia polymorpha HOM05D001987 ORTHO05D004018 9.5e-13 76.6 91 51.6
Medtr0002s0140 Medicago truncatula HOM05D008107 ORTHO05D004018 9.5e-13 76.6 107 45.8
SEGI_15868 Sequoiadendron giganteum HOM05D001987 ORTHO05D004018 9.5e-13 76.6 45 80.0
Lsat_1_v5_gn_8_92120 Lactuca sativa HOM05D001987 ORTHO05D004018 1.6e-12 75.9 120 40.0
Gohir.D12G072201 Gossypium hirsutum HOM05D001987 ORTHO05D004018 6.2e-12 73.9 104 44.2
ECA236G3336 Erigeron canadensis HOM05D001987 ORTHO05D004018 1.1e-11 73.2 114 41.2
Gohir.D09G095250 Gossypium hirsutum HOM05D001987 ORTHO05D004018 1.1e-11 73.2 44 79.5
HanXRQChr06g0172541 Helianthus annuus HOM05D001987 ORTHO05D004018 1.4e-11 72.8 118 39.0
Medtr0702s0030 Medicago truncatula HOM05D001987 ORTHO05D004018 8.9e-11 70.1 45 73.3
Medtr8g081460 Medicago truncatula HOM05D001987 ORTHO05D004018 8.9e-11 70.1 45 73.3
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 1.2e-10 69.7 105 44.8
Lalb_Chr18g0049321 Lupinus albus HOM05D001987 ORTHO05D004018 9.9e-10 66.6 43 72.1
SEGI_04734 Sequoiadendron giganteum HOM05D000445 ORTHO05D004018 2.2e-09 65.5 102 44.1
Psat5g096040 Pisum sativum HOM05D001987 ORTHO05D004018 2.9e-09 65.1 94 44.7
Lsat_1_v5_gn_4_106021 Lactuca sativa HOM05D001987 ORTHO05D004018 4.9e-09 64.3 99 44.4
Hund08207 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.4e-08 62.8 89 49.4
BolC6t39714H Brassica oleracea HOM05D001987 ORTHO05D004018 2.4e-08 62.0 44 63.6
Gohir.A05G144450 Gossypium hirsutum HOM05D001987 ORTHO05D004018 7.1e-08 60.5 65 53.8
HanXRQChr05g0152551 Helianthus annuus HOM05D001987 ORTHO05D004018 2.1e-07 58.9 37 83.8
HanXRQChr11g0345301 Helianthus annuus HOM05D001987 ORTHO05D004018 6.0e-07 57.4 37 81.1
Gorai.008G079300 Gossypium raimondii HOM05D001987 ORTHO05D004018 1.0e-06 56.6 90 44.4
Nn021s41520 Nelumbo nucifera HOM05D001987 ORTHO05D004018 1.3e-06 56.2 37 75.7
Nn070s42373 Nelumbo nucifera HOM05D001987 ORTHO05D004018 1.3e-06 56.2 37 75.7
Nitab4.5_0011882g0020 Nicotiana tabacum HOM05D000964 ORTHO05D001488 1.7e-06 55.8 35 80.0
Lalb_Chr13g0291611 Lupinus albus HOM05D001987 ORTHO05D004018 3.9e-06 54.7 37 75.7
Medtr2g087560 Medicago truncatula HOM05D001987 ORTHO05D004018 3.9e-06 54.7 35 77.1
BNapus_Darmor_BZH_scaffold_253p00360 Brassica napus HOM05D001987 ORTHO05D004018 5.1e-06 54.3 35 77.1
C03p38120 Brassica napus HOM05D001987 ORTHO05D004018 5.1e-06 54.3 35 77.1
Lsat_1_v5_gn_5_144720 Lactuca sativa HOM05D000964 ORTHO05D001488 8.6e-06 53.5 26 96.2
Nitab4.5_0000460g0030 Nicotiana tabacum HOM05D001387 ORTHO05D004018 8.6e-06 53.5 26 96.2


User provided reference genes

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