Gene: ATCG00790

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier ATCG00790
  • Transcript Identifier ATCG00790.1
  • Gene Type Coding gene
  • Location ChrC : 81189-82652 : negative

Gene Family Information

  • ID HOM05D001987
  • #Genes/#Species 333/77
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid ATCG00790.1
  • symbol RPL16
  • uniprot P56793

Descriptions

  • Description ribosomal protein L16
  • Computational description ribosomal protein L16 (RPL16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L16 (InterPro:IPR000114), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L16, conserved site (InterPro:IPR020798); BEST Arabidopsis thaliana protein match is: PLANT U-BOX 12 (TAIR:AT2G28830.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
TAS
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0032543
IBA
Gene Ontologymitochondrial translation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0019843
IBA
Gene OntologyrRNA binding1
GO:0019843
IEA
InterProrRNA binding
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
TAS
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid3
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast4
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope5
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma5
GO:0000311
TAS
Gene Ontologyplastid large ribosomal subunit
GO:0005762
IBA
Gene Ontologymitochondrial large ribosomal subunit1
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016180 Ribosomal protein L10e/L16
IPR000114 Ribosomal protein L16
IPR036920 Ribosomal protein L10e/L16 superfamily
Mapman id Description
17.7.2.1.14 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL16