Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 8.9e-198 693.3 337 100.0
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 9.6e-176 620.2 338 87.3
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.0e-174 613.6 337 86.4
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.0e-164 581.3 338 82.5
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.1e-163 580.1 340 80.9
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.5e-163 578.9 333 82.6
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 5.5e-163 577.8 334 82.0
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.2e-162 576.6 340 81.8
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.7e-162 575.5 340 81.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 4.6e-162 574.7 339 81.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.8e-161 572.8 332 81.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 5.1e-161 571.2 334 82.3
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 8.7e-161 570.5 342 80.7
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.9e-160 569.3 336 81.2
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.3e-159 566.6 336 79.8
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.2e-159 565.8 339 79.9
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.3e-159 564.3 333 80.5
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.1e-158 563.5 332 80.1
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.3e-158 561.2 337 79.2
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 9.0e-158 560.5 331 80.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.0e-156 557.0 341 79.5
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 2.9e-156 555.4 341 77.1
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 5.0e-156 554.7 310 83.2
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 6.5e-156 554.3 340 78.5
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.5e-156 553.9 342 78.9
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.9e-155 552.7 331 78.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.2e-155 552.0 308 85.4
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 3.2e-155 552.0 341 76.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 7.2e-155 550.8 346 76.9
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 9.4e-155 550.4 340 77.4
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.2e-154 550.1 336 78.3
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.6e-154 549.7 341 77.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 2.7e-154 548.9 340 78.5
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.6e-154 548.1 341 76.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.6e-154 548.1 341 76.8
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 6.1e-154 547.7 332 79.5
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 6.1e-154 547.7 333 79.3
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 7.9e-154 547.4 351 76.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 7.9e-154 547.4 333 79.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.4e-153 546.6 341 76.8
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.4e-153 546.6 341 76.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.4e-153 546.6 340 77.1
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.3e-153 545.8 336 78.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.0e-153 545.4 331 80.1
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 3.9e-153 545.0 339 77.3
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 3.9e-153 545.0 340 76.8
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.9e-153 545.0 340 77.1
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 5.1e-153 544.7 330 80.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 8.8e-153 543.9 330 79.7
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.1e-152 543.5 333 77.8
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.5e-152 543.1 324 79.0
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.0e-152 542.7 338 77.5
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.5e-152 542.3 340 77.4
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.5e-152 542.3 344 77.6
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 7.4e-152 540.8 333 77.8
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.3e-151 540.0 330 80.0
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.7e-151 539.7 338 78.4
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.8e-151 538.9 330 79.7
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.7e-151 538.5 336 76.5
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.8e-151 538.1 333 76.6
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.8e-151 538.1 309 82.2
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.8e-151 538.1 337 77.4
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 8.2e-151 537.3 341 77.7
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 8.2e-151 537.3 334 76.0
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.1e-150 537.0 339 77.9
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.1e-150 537.0 330 77.9
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.4e-150 535.8 338 76.3
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 3.1e-150 535.4 341 76.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 3.1e-150 535.4 340 75.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 9.1e-150 533.9 331 77.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.0e-149 532.7 324 77.5
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.4e-149 531.9 308 79.9
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.7e-148 529.6 341 77.1
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 2.2e-148 529.3 331 75.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.8e-148 528.5 333 74.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 5.0e-148 528.1 333 74.5
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.2e-147 525.4 338 74.3
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.2e-147 524.2 316 79.4
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 7.2e-147 524.2 332 75.0
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 9.4e-147 523.9 311 77.5
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.2e-146 523.5 309 79.3
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 4.7e-146 521.5 339 76.1
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.3e-145 519.2 332 74.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 6.7e-145 517.7 358 71.5
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.1e-144 516.9 334 75.1
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.1e-144 516.9 331 75.2
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.6e-144 515.8 331 75.2
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 5.7e-144 514.6 317 76.7
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.7e-143 513.1 342 75.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 7.0e-142 507.7 298 81.2
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 5.9e-141 504.6 336 72.9
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 5.0e-140 501.5 313 76.0
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.1e-139 500.4 383 64.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.5e-139 500.0 336 72.6
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.9e-139 499.6 318 78.0
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.6e-138 496.5 319 76.2
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 8.0e-138 494.2 339 72.6
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.3e-137 492.7 332 72.0
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 4.0e-137 491.9 332 71.1
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.0e-136 489.6 341 71.3
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.6e-136 489.2 307 75.6
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 2.6e-136 489.2 318 74.8
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 7.4e-136 487.6 286 79.7
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.8e-134 483.0 332 71.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.6e-133 479.9 356 68.8
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 2.5e-131 472.6 341 66.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.2e-131 472.2 337 68.5
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.5e-131 471.5 325 70.8
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.4e-131 470.7 332 67.8
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.5e-128 463.4 267 82.0
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.0e-128 463.0 307 70.4
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.6e-128 462.6 318 71.7
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.7e-125 452.6 305 67.9
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 5.0e-124 448.4 340 66.5
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.2e-123 445.7 283 74.9
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 4.2e-123 445.3 263 79.1
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 6.8e-121 438.0 308 66.9
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.0e-120 436.4 246 84.1
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.3e-119 431.4 317 65.0
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 7.0e-118 427.9 276 73.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 2.3e-113 412.9 312 63.1
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.3e-113 412.9 287 70.7
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 7.5e-112 407.9 306 63.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 4.9e-111 405.2 311 65.0
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 6.4e-103 378.3 403 51.6
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.9e-99 366.7 222 79.7
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 3.4e-96 355.9 303 60.1
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.4e-94 349.7 241 68.9
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.3e-92 344.0 247 66.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.8e-90 336.3 226 68.1
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.6e-85 320.5 227 66.5
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.6e-82 309.3 301 53.2
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 3.0e-76 289.7 261 57.9
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.3e-75 285.0 290 52.4
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.3e-73 278.9 170 78.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-69 266.9 175 73.1
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 6.9e-57 225.3 179 63.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.2e-56 224.6 141 74.5
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-54 218.0 130 77.7
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.9e-49 198.7 108 85.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.6e-37 159.8 97 78.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.4e-33 147.9 171 52.6
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 4.8e-26 122.9 77 64.9
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 4.5e-24 116.3 64 81.2
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-22 110.5 70 78.6
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.5e-22 110.5 66 72.7
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 3.7e-18 96.7 80 65.0
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 4.8e-18 96.3 169 38.5
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.1e-17 92.0 55 78.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 5.0e-15 86.3 81 54.3
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 2.8e-10 70.5 208 29.3
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 3.7e-10 70.1 208 27.9
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.1e-09 68.6 198 25.8
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 7.0e-09 65.9 41 65.9
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.5e-08 63.5 214 26.2
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 1.0e-07 62.0 243 25.9
MCO07G578 Micromonas commoda HOM05D002024 ORTHO05D004352 1.7e-07 61.2 153 27.5
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.7e-07 61.2 167 28.1
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 8.5e-07 58.9 212 26.4
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 8.5e-07 58.9 212 26.4
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 8.5e-07 58.9 212 25.9
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 1.9e-06 57.8 156 27.6
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 2.5e-06 57.4 156 25.0
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 3.2e-06 57.0 213 24.9
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 4.2e-06 56.6 153 28.8
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 5.5e-06 56.2 156 27.6
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 9.5e-06 55.5 208 27.9


User provided reference genes

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