Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.6e-233 810.4 445 100.0
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 1.8e-174 616.3 446 74.2
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 2.4e-174 615.9 450 76.2
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 3.5e-173 612.1 453 74.4
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 1.3e-172 610.1 453 74.8
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.8e-172 608.6 419 79.2
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 8.5e-172 607.4 434 77.0
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 2.5e-171 605.9 449 75.1
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 1.6e-170 603.2 439 75.9
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.7e-170 602.4 449 74.8
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 4.7e-170 601.7 339 84.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 8.0e-170 600.9 438 76.0
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 8.0e-170 600.9 453 73.3
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 6.7e-169 597.8 453 73.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 1.5e-168 596.7 446 72.4
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 7.5e-168 594.3 456 71.5
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 1.7e-167 593.2 449 75.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 2.2e-167 592.8 452 74.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 6.3e-167 591.3 455 70.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 6.3e-167 591.3 455 70.8
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 8.3e-167 590.9 451 71.6
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 1.4e-166 590.1 441 74.1
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 1.4e-166 590.1 448 75.9
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 1.8e-166 589.7 442 74.2
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 3.1e-166 589.0 453 71.7
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 4.1e-166 588.6 451 74.7
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 9.1e-166 587.4 451 74.9
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 1.2e-165 587.0 452 71.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.2e-165 587.0 447 72.5
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 3.5e-165 585.5 452 73.9
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 3.5e-165 585.5 451 74.9
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 5.9e-165 584.7 421 77.4
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 5.9e-165 584.7 421 77.4
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 1.0e-164 583.9 454 71.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 1.1e-163 580.5 454 71.8
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.5e-163 580.1 446 74.9
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 5.5e-163 578.2 451 73.4
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 5.5e-163 578.2 446 73.1
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 6.1e-162 574.7 451 71.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 6.1e-162 574.7 447 72.7
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 1.0e-161 573.9 449 72.4
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.0e-161 572.0 451 72.7
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 5.2e-161 571.6 450 70.4
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 2.0e-160 569.7 454 72.9
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 2.0e-160 569.7 446 68.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 9.8e-160 567.4 450 70.0
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.3e-159 567.0 450 70.4
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 1.3e-159 567.0 445 73.3
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 1.7e-159 566.6 453 70.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 3.7e-159 565.5 450 70.2
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 8.3e-159 564.3 457 68.9
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 1.8e-158 563.1 450 71.3
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 3.1e-158 562.4 448 70.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 2.0e-157 559.7 448 72.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 3.5e-157 558.9 448 72.3
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 7.7e-157 557.8 405 75.1
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 1.0e-156 557.4 446 71.5
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 1.0e-156 557.4 439 70.6
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 2.3e-156 556.2 452 69.7
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.6e-156 554.7 452 70.6
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 1.1e-155 553.9 423 73.0
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 1.5e-155 553.5 332 78.0
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 1.9e-155 553.1 436 68.6
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 2.5e-155 552.7 453 71.7
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 3.3e-155 552.4 450 69.3
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 1.6e-154 550.1 450 68.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 2.1e-154 549.7 448 70.8
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 2.1e-154 549.7 448 68.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 2.8e-154 549.3 444 68.9
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 3.6e-154 548.9 339 76.7
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 4.7e-154 548.5 339 76.1
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 6.1e-154 548.1 339 76.1
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 1.4e-153 547.0 443 69.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 1.8e-153 546.6 443 69.5
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 7.5e-152 541.2 332 76.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 2.2e-151 539.7 462 64.1
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 2.2e-151 539.7 310 82.3
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 2.2e-151 539.7 339 75.5
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 2.4e-150 536.2 339 74.3
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 2.4e-150 536.2 338 74.3
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 2.5e-147 526.2 338 74.0
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 9.5e-147 524.2 313 78.3
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 2.1e-146 523.1 338 74.3
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 6.8e-145 518.1 381 71.7
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 6.8e-145 518.1 381 71.4
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 8.9e-145 517.7 318 76.4
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 5.4e-142 508.4 445 64.9
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 1.2e-141 507.3 341 69.5
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 6.0e-141 505.0 314 76.1
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 2.3e-140 503.1 338 72.8
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 8.6e-140 501.1 338 71.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 1.9e-139 500.0 338 68.6
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 4.3e-139 498.8 331 75.8
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 6.8e-137 491.5 456 63.6
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 3.4e-136 489.2 449 63.3
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 1.4e-134 483.8 338 66.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 3.2e-134 482.6 338 66.9
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 4.1e-134 482.3 454 60.4
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 3.5e-133 479.2 338 66.0
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 3.5e-133 479.2 338 66.0
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 1.0e-132 477.6 451 64.7
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.3e-132 477.2 277 83.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 8.6e-132 474.6 338 66.0
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 8.6e-132 474.6 338 66.0
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 8.6e-132 474.6 459 57.7
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 4.3e-131 472.2 298 73.8
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 2.0e-128 463.4 339 65.8
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 1.3e-127 460.7 451 59.0
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 3.7e-127 459.1 453 58.5
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 3.7e-127 459.1 453 58.5
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.1e-126 457.6 339 66.1
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 2.4e-126 456.4 453 59.2
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 4.1e-126 455.7 453 58.9
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 9.2e-126 454.5 328 65.2
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 2.1e-125 453.4 340 64.4
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.6e-122 442.6 336 64.3
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 4.7e-122 442.2 455 53.6
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 5.2e-121 438.7 340 62.9
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 2.0e-120 436.8 349 59.6
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 3.8e-119 432.6 339 59.6
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.4e-118 429.9 393 67.7
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.0e-116 422.9 347 59.7
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.0e-116 422.9 347 59.7
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-114 416.8 450 59.8
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.6e-114 416.0 347 58.8
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 6.2e-114 415.2 362 59.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 1.4e-102 377.5 236 75.8
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 7.6e-96 355.1 225 76.0
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.9e-94 350.5 341 54.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 7.9e-93 345.1 349 51.0
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 3.9e-92 342.8 362 48.3
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 7.2e-78 295.4 214 61.7
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 4.1e-65 253.1 267 63.7
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 6.5e-63 245.7 226 52.2
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.4e-57 228.0 460 32.8
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 3.1e-41 173.7 186 72.0
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.8e-21 107.5 67 70.1
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.9e-17 94.7 76 59.2
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 8.1e-13 79.3 52 65.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.4e-09 67.8 33 81.8
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 7.8e-08 62.8 128 59.4
Ah.04g156720 Amaranthus hybridus HOM05D002037 ORTHO05D005261 5.6e-06 56.6 39 76.9


User provided reference genes

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