Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1194.1 596 100.0
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1095.5 594 93.9
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.7e-252 875.9 591 74.8
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 7.2e-251 870.5 592 74.5
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 1.6e-250 869.4 593 75.2
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 2.6e-248 862.1 592 73.0
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.5e-243 846.3 591 70.7
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 6.1e-242 840.9 591 71.1
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 2.6e-240 835.5 592 72.3
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 4.4e-240 834.7 594 72.9
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 9.8e-240 833.6 594 71.2
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.3e-239 833.2 594 71.0
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 4.9e-239 831.2 592 71.5
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 8.3e-239 830.5 592 70.4
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 3.1e-238 828.6 592 70.9
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 3.1e-238 828.6 620 67.7
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 2.0e-237 825.9 592 70.4
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 3.5e-237 825.1 594 70.7
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.1e-234 815.8 592 69.9
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 3.6e-234 815.1 592 70.3
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 6.1e-234 814.3 591 70.2
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 2.3e-233 812.4 588 70.4
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 2.0e-232 809.3 591 70.2
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 3.4e-232 808.5 589 70.5
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 4.4e-232 808.1 592 68.6
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 7.5e-232 807.4 588 69.9
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 9.8e-232 807.0 594 69.2
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 6.4e-231 804.3 593 69.6
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 5.4e-230 801.2 593 69.8
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.4e-230 801.2 591 68.5
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.6e-229 799.7 593 69.8
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 2.0e-229 799.3 591 67.5
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 3.5e-229 798.5 614 66.9
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.3e-228 796.6 593 69.3
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 6.6e-228 794.3 591 68.4
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 5.6e-227 791.2 591 68.4
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-226 790.0 593 69.1
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 2.1e-226 789.3 591 65.7
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.1e-225 786.9 553 71.4
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.1e-225 786.9 591 69.2
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 4.4e-224 781.6 592 68.2
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 1.7e-223 779.6 591 66.7
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.2e-222 775.4 572 70.3
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 4.1e-222 775.0 592 65.7
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 7.8e-221 770.8 592 67.7
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 4.3e-219 765.0 591 65.1
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 5.6e-219 764.6 595 66.7
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.2e-218 763.5 590 64.9
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 4.7e-218 761.5 598 65.1
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 4.0e-217 758.4 591 64.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.2e-217 758.1 593 64.4
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.5e-216 756.5 544 69.5
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 3.4e-216 755.4 596 63.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 5.8e-216 754.6 595 65.7
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 7.5e-216 754.2 595 65.2
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.3e-215 753.4 595 65.4
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.3e-215 753.4 591 64.1
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.9e-215 752.3 593 66.9
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 8.3e-215 750.7 591 64.0
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 8.3e-215 750.7 594 64.3
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.1e-214 750.4 553 70.7
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.1e-214 750.4 598 65.7
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.1e-214 750.4 595 65.2
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 2.1e-213 746.1 597 65.0
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 2.7e-213 745.7 591 65.1
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 3.5e-213 745.3 595 65.4
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 4.6e-213 745.0 593 64.2
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 7.8e-213 744.2 595 64.5
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.1e-212 741.5 551 70.1
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.1e-211 740.3 633 63.2
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 9.5e-211 737.3 597 62.8
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-210 735.7 551 69.5
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-210 735.7 551 69.5
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 6.8e-209 731.1 591 62.6
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 1.7e-207 726.5 597 62.0
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.1e-205 719.5 597 62.8
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.0e-204 717.2 596 63.1
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 5.8e-200 701.4 594 61.1
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 3.2e-198 695.7 593 60.5
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 6.0e-197 691.4 594 59.8
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 6.0e-197 691.4 599 59.4
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.0e-196 690.6 594 60.4
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 5.1e-196 688.3 605 59.5
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 3.3e-195 685.6 595 60.3
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 3.3e-195 685.6 594 60.1
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 2.4e-193 679.5 594 59.1
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.2e-192 677.2 551 64.4
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 4.2e-190 668.7 594 58.2
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.0e-188 664.1 596 57.6
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 6.2e-186 654.8 591 57.4
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 7.6e-184 647.9 596 57.2
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.3e-180 637.1 552 60.1
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 2.0e-176 623.2 592 56.6
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 4.3e-171 605.5 599 53.4
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 7.9e-157 558.1 597 52.9
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.0e-156 557.8 409 69.9
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 9.7e-155 551.2 602 49.8
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 3.1e-153 546.2 462 61.5
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.9e-151 539.7 603 48.6
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 7.4e-147 525.0 482 55.4
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.8e-145 520.4 591 49.7
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 4.1e-145 519.2 598 46.3
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.7e-143 513.8 312 81.7
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.7e-141 505.8 470 56.2
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.8e-124 450.7 312 72.4
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 5.4e-105 386.0 259 76.4
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 2.1e-96 357.5 276 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 7.8e-96 355.5 599 39.1
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 8.6e-95 352.1 613 36.9
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.5e-94 351.3 608 38.5
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.8e-93 347.1 395 51.6
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.7e-87 327.8 376 46.0
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.6e-83 312.4 379 51.2
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 3.4e-67 260.4 198 66.2
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.0e-66 258.8 198 65.7
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.5e-66 256.1 198 64.6
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.1e-62 245.4 198 61.6
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.8e-59 233.0 319 42.9
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 2.7e-56 224.2 175 66.9
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 8.8e-47 192.6 648 28.5
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.0e-43 181.4 159 57.9
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 7.7e-35 152.9 206 45.6
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.8e-34 150.6 156 52.6
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 7.2e-33 146.4 130 57.7
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.2e-32 145.6 95 68.4
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.6e-32 145.2 164 54.9
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.3e-29 135.6 90 68.9
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.5e-27 127.5 86 74.4
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.7e-27 126.3 86 73.3
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.6e-16 92.0 82 56.1
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.5e-11 73.9 43 76.7
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 2.3e-10 71.6 73 53.4
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.3e-09 67.8 41 73.2
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 4.7e-08 63.9 76 47.4
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 1.8e-07 62.0 37 70.3
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 4.4e-06 57.4 640 20.8


User provided reference genes

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