Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1621.7 820 100.0
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1223.4 818 74.7
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1214.5 819 74.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1212.2 821 74.1
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1174.1 817 71.4
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1161.4 820 71.1
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1154.0 816 69.7
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1151.7 822 71.7
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1151.3 818 70.8
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1151.0 828 70.3
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1149.8 825 70.7
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1148.7 820 70.6
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1146.3 826 70.5
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 0.0e+00 1141.7 797 71.9
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1139.8 826 70.2
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1132.1 732 77.6
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 0.0e+00 1131.7 819 71.4
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1129.4 823 70.4
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1129.0 818 70.2
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 0.0e+00 1125.5 817 68.5
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1124.0 820 68.5
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1123.2 820 69.0
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 0.0e+00 1122.1 822 69.6
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1121.7 819 69.7
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1121.3 818 69.3
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1121.3 822 69.2
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1119.8 821 69.1
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 0.0e+00 1118.6 817 68.8
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 0.0e+00 1115.5 820 68.9
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1111.3 819 69.6
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1110.9 816 68.8
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 0.0e+00 1110.5 835 67.4
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1107.8 819 69.1
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 0.0e+00 1107.8 787 70.0
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1106.7 840 67.1
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 0.0e+00 1101.7 736 76.9
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 0.0e+00 1101.3 832 66.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1095.5 594 93.9
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1091.6 819 68.7
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 0.0e+00 1091.3 816 68.3
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 0.0e+00 1078.9 824 68.1
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 0.0e+00 1075.8 835 66.3
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 0.0e+00 1075.5 827 64.8
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.1e-311 1072.8 825 65.7
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 1.7e-311 1072.4 823 64.6
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 4.3e-310 1067.8 815 64.9
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 3.4e-307 1058.1 829 63.6
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 5.7e-307 1057.4 821 66.7
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 4.9e-306 1054.3 840 63.2
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 4.9e-306 1054.3 821 65.4
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 6.3e-306 1053.9 880 63.1
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.6e-304 1049.3 796 67.0
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.3e-303 1046.2 844 63.0
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.7e-303 1045.8 819 66.7
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.0e-300 1036.6 758 68.1
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.8e-300 1035.8 807 65.4
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 5.2e-300 1034.2 806 64.4
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 6.8e-300 1033.9 799 66.2
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 2.6e-299 1031.9 828 65.9
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 9.8e-299 1030.0 829 63.7
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.9e-298 1028.5 821 64.4
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 830 63.1
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 807 64.9
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 5.4e-297 1024.2 803 65.4
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 3.9e-295 1018.1 821 62.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.6e-293 1012.7 806 64.3
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 2.1e-293 1012.3 805 64.3
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 2.8e-293 1011.9 826 63.1
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 6.2e-293 1010.7 806 64.0
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 4.0e-292 1008.1 800 64.6
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.1e-286 989.9 799 64.1
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 2.3e-284 982.2 821 60.8
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 2.0e-283 979.2 821 60.3
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.1e-281 973.4 822 59.7
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 3.2e-281 971.8 823 60.4
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 3.2e-281 971.8 822 60.1
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 7.8e-280 967.2 822 59.5
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.1e-279 964.5 863 61.3
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.1e-278 963.4 823 59.8
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 9.5e-278 960.3 822 60.0
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 4.7e-277 958.0 822 58.5
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 1.1e-276 956.8 849 58.4
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 2.9e-274 948.7 924 54.4
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.4e-268 929.9 721 64.5
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.1e-264 916.0 799 58.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 7.3e-262 907.5 830 57.1
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.1e-257 893.6 819 56.9
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 9.6e-254 880.6 612 71.2
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.8e-251 871.3 620 71.8
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.8e-251 871.3 620 71.8
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.2e-242 842.8 621 69.9
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 2.0e-235 819.7 774 56.1
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.1e-228 797.3 618 66.5
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 2.5e-217 759.6 717 54.5
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 3.7e-213 745.7 623 61.6
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 9.1e-212 741.1 800 51.9
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 1.2e-206 724.2 769 50.3
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.5e-198 697.2 820 46.0
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 5.9e-195 685.3 723 49.9
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 5.6e-185 652.1 404 80.7
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.5e-185 651.4 491 68.6
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 4.3e-177 625.9 397 79.8
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.1e-172 611.3 547 58.9
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.9e-162 576.2 550 55.1
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 6.8e-159 565.5 472 59.1
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.1e-152 543.9 394 70.3
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 7.1e-140 502.3 340 70.9
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-136 491.5 347 69.2
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.9e-135 485.7 344 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 5.5e-132 476.1 781 38.5
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.6e-131 474.6 789 38.0
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 5.8e-126 456.1 479 54.3
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 4.5e-118 429.9 775 36.3
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.6e-102 377.5 462 43.5
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 2.8e-96 357.5 276 66.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 9.1e-87 325.9 297 58.6
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.1e-83 313.2 158 100.0
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.0e-82 312.4 260 60.4
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.0e-82 312.4 379 51.2
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 6.6e-77 293.1 183 73.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 4.7e-75 287.0 862 29.5
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.8e-71 275.0 304 49.0
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.3e-69 268.9 323 45.8
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.8e-65 252.7 198 63.1
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 8.0e-59 233.0 173 70.5
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.2e-58 230.3 144 74.3
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.8e-58 229.9 173 70.5
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.4e-57 227.6 229 49.8
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 3.7e-56 224.2 175 66.9
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 4.9e-48 197.2 233 51.9
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.9e-44 185.3 219 50.7
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.6e-38 164.1 240 38.8
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.8e-38 163.3 130 60.8
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 8.1e-27 126.7 152 48.7
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-18 99.0 113 44.2
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 6.5e-16 90.5 858 21.4
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 3.7e-11 74.7 403 22.3
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 8.2e-11 73.6 92 46.7
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.2e-11 73.6 43 76.7
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 8.4e-08 63.5 72 48.6
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 1.6e-06 59.3 36 69.4


User provided reference genes

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