Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 7.3e-164 580.5 291 100.0
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 9.9e-153 543.5 291 91.8
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 3.8e-152 541.6 291 90.0
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 6.4e-152 540.8 287 90.9
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 90.4
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 6.0e-150 534.3 291 89.7
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.1e-149 531.2 291 89.3
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 87.6
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 1.1e-148 530.0 291 88.0
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.1e-148 530.0 291 88.7
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.5e-148 529.6 291 88.7
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 1.9e-148 529.3 291 89.0
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 2.5e-148 528.9 291 88.3
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 3.3e-148 528.5 291 88.3
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 4.3e-148 528.1 289 87.5
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 4.3e-148 528.1 289 88.6
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 87.6
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 7.3e-148 527.3 287 88.5
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 87.6
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.2e-147 526.6 319 82.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 1.2e-147 526.6 291 88.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 87.3
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 87.6
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 88.7
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 88.7
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 2.8e-147 525.4 291 87.3
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 2.8e-147 525.4 291 86.9
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 2.8e-147 525.4 291 88.3
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 3.6e-147 525.0 291 88.0
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 87.3
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 6.2e-147 524.2 291 87.3
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 6.2e-147 524.2 291 88.3
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 6.2e-147 524.2 290 87.9
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 8.1e-147 523.9 288 88.5
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.4e-146 523.1 288 88.5
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 87.6
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.9
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.9
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.9
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 1.8e-146 522.7 289 87.5
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.3
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.4e-146 522.3 291 87.6
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.4e-146 522.3 291 87.3
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 3.1e-146 521.9 291 87.6
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 3.1e-146 521.9 291 86.9
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 4.0e-146 521.5 287 87.8
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 4.0e-146 521.5 291 87.3
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 5.2e-146 521.2 289 87.9
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 6.9e-146 520.8 287 88.2
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 6.9e-146 520.8 291 86.3
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 9.0e-146 520.4 291 86.3
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 1.5e-145 519.6 291 86.3
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 2.0e-145 519.2 295 86.4
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 2.6e-145 518.8 291 86.3
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 3.4e-145 518.5 291 86.3
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.4e-145 518.5 291 87.6
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 3.4e-145 518.5 287 87.1
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 5.8e-145 517.7 287 86.8
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 5.8e-145 517.7 291 86.9
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 5.8e-145 517.7 287 87.5
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 5.8e-145 517.7 291 85.9
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 5.8e-145 517.7 291 87.3
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 7.6e-145 517.3 291 87.6
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 85.2
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 2.2e-144 515.8 291 84.9
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.2e-144 515.8 287 87.1
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.2e-144 515.8 286 86.0
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 2.9e-144 515.4 291 85.9
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 2.9e-144 515.4 289 85.1
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-144 515.0 290 87.6
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-143 513.5 298 84.6
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.1e-143 513.5 291 86.6
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.9e-143 512.7 289 86.5
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.9e-143 512.7 291 86.6
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.9e-143 512.7 291 85.6
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 2.4e-143 512.3 290 86.2
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.2e-143 511.9 291 84.5
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.2e-143 511.9 291 84.5
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 3.2e-143 511.9 312 80.8
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.3e-143 510.4 287 84.7
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.3e-143 510.4 287 84.7
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.6e-142 509.6 287 86.1
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.6e-142 509.6 290 85.9
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.1e-142 509.2 289 85.5
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 2.1e-142 509.2 292 85.3
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 6.0e-142 507.7 295 84.7
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 6.0e-142 507.7 292 84.9
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.3e-141 506.5 275 89.1
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.3e-141 506.5 286 85.3
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 3.0e-141 505.4 291 85.9
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.0e-141 505.4 363 72.7
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 3.9e-141 505.0 291 85.6
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 8.7e-141 503.8 291 85.6
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 8.7e-141 503.8 273 89.7
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.9e-140 502.7 290 85.5
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 1.3e-139 500.0 296 83.8
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.3e-139 500.0 291 83.8
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.6e-139 499.6 279 89.6
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 8.1e-139 497.3 290 84.8
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 1.8e-138 496.1 280 86.1
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 6.9e-138 494.2 312 80.8
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 1.5e-137 493.0 272 88.2
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 2.0e-137 492.7 272 87.9
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 3.4e-137 491.9 270 88.5
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 1.3e-136 490.0 272 87.9
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.7e-136 489.6 301 81.7
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.8e-136 488.4 287 83.6
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 3.8e-136 488.4 286 83.2
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 6.4e-136 487.6 273 87.2
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.1e-135 486.9 315 81.9
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.2e-135 485.0 272 86.4
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 5.4e-135 484.6 272 86.0
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 5.4e-135 484.6 292 81.2
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 7.1e-135 484.2 268 89.9
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.3e-135 483.8 273 84.2
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.7e-134 482.3 259 90.7
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.3e-133 479.2 293 82.3
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.5e-132 475.7 291 82.1
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 7.4e-132 474.2 272 86.0
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 7.4e-132 474.2 296 80.1
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 7.4e-132 474.2 296 80.1
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 2.1e-131 472.6 272 85.7
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 2.1e-131 472.6 284 81.7
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.4e-130 469.9 253 90.1
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 4.0e-130 468.4 253 89.7
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 4.9e-128 461.5 291 80.1
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.4e-127 459.9 271 80.4
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 4.2e-127 458.4 258 87.6
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.5e-124 449.9 238 92.4
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 2.5e-124 449.1 324 71.3
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 5.6e-124 448.0 284 74.3
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.3e-123 446.8 286 72.7
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 2.1e-123 446.0 242 90.9
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 2.0e-121 439.5 247 85.4
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 7.1e-119 431.0 238 87.4
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 1.1e-116 423.7 290 75.2
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 5.3e-114 414.8 394 59.6
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 1.6e-110 403.3 288 67.7
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 8.8e-109 397.5 220 87.7
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 6.3e-107 391.3 275 72.4
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.3e-96 357.1 189 89.4
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.3e-96 357.1 198 87.4
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-92 343.6 275 65.5
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.2e-89 334.0 173 91.3
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-86 322.0 271 64.6
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 2.3e-85 319.7 288 61.1
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 3.7e-83 312.4 278 60.4
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-76 289.7 172 79.1
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 3.5e-73 279.3 245 62.0
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.6e-68 263.1 261 50.2
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 9.8e-68 261.2 194 70.6
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 2.3e-48 196.8 131 75.6
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 2.3e-48 196.8 131 75.6
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 5.1e-48 195.7 193 58.0
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 3.2e-34 149.8 137 59.1
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 7.3e-31 138.7 129 61.2
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 3.9e-24 116.3 72 70.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.5e-23 114.4 91 62.6
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.5e-23 113.6 66 77.3
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 8.1e-22 108.6 88 64.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 8.1e-22 108.6 88 64.8
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 3.8e-19 99.8 64 76.6
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 3.0e-16 90.1 51 76.5
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-14 84.7 46 89.1
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.1e-10 71.6 90 52.2
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.1e-10 71.6 90 52.2
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.4e-10 71.2 45 71.1
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 7.9e-09 65.5 39 84.6
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-08 64.7 45 62.2
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 6.7e-08 62.4 34 91.2


User provided reference genes

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