Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.7e-185 652.5 322 100.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.9e-125 453.0 317 71.0
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.4e-123 446.8 317 70.3
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.8e-123 446.4 317 69.7
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 5.8e-122 441.4 314 69.4
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.9e-117 426.4 319 69.0
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.8e-116 421.8 372 59.7
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 1.0e-113 414.1 316 63.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.0e-113 414.1 316 63.6
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 3.8e-113 412.1 314 66.6
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 5.0e-113 411.8 318 65.7
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 5.0e-113 411.8 316 66.1
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.1e-112 410.6 324 65.4
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.4e-112 410.2 316 64.6
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 4.2e-112 408.7 316 65.2
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.6e-111 406.8 319 63.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.1e-111 406.4 316 64.9
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 2.3e-110 402.9 316 62.7
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 1.5e-109 400.2 233 82.4
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.0e-109 399.8 316 62.0
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 2.5e-109 399.4 316 63.9
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 4.3e-109 398.7 317 65.6
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 5.7e-109 398.3 316 63.9
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.3e-108 397.1 354 56.8
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 8.2e-108 394.4 317 65.3
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.1e-107 394.0 322 64.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.4e-107 393.7 323 61.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 3.1e-107 392.5 323 61.3
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.1e-107 392.5 324 62.7
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 4.1e-107 392.1 316 60.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 5.3e-107 391.7 290 66.6
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 6.9e-107 391.3 312 64.4
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 7.7e-106 387.9 320 61.2
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.7e-105 386.7 316 62.0
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 5.0e-105 385.2 324 59.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.9e-104 383.3 316 61.7
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.2e-104 381.3 315 62.2
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 9.4e-104 380.9 324 59.6
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.2e-103 380.6 315 61.9
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.2e-103 380.6 340 59.7
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 3.6e-103 379.0 318 62.3
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 7.9e-103 377.9 320 60.9
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 3.0e-102 375.9 317 60.9
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.0e-102 375.9 315 61.6
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 8.8e-102 374.4 317 59.9
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 8.8e-102 374.4 319 59.2
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 2.0e-101 373.2 316 59.8
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 3.3e-101 372.5 319 58.9
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 3.3e-101 372.5 319 58.9
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.3e-101 372.5 313 62.0
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 9.7e-101 370.9 330 58.2
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 9.7e-101 370.9 317 61.2
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 9.7e-101 370.9 319 59.9
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.7e-100 370.2 325 59.4
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.7e-100 370.2 325 59.4
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.7e-100 370.2 328 57.6
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 2.8e-100 369.4 319 59.6
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 6.3e-100 368.2 319 58.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 8.2e-100 367.9 319 57.4
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 8.2e-100 367.9 209 84.2
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-99 367.5 322 59.0
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-99 367.5 322 59.0
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.1e-99 367.5 315 57.8
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.8e-99 366.7 315 59.4
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.1e-99 365.9 307 61.6
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 7.0e-99 364.8 319 58.6
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.0e-98 363.2 319 57.7
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 3.5e-98 362.5 271 63.8
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 3.5e-98 362.5 273 64.5
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 5.9e-98 361.7 313 58.1
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 5.9e-98 361.7 320 59.4
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.0e-97 360.9 314 60.2
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 2.2e-97 359.8 365 53.4
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.2e-97 359.8 318 58.5
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.9e-97 359.4 275 65.1
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 3.8e-97 359.0 319 57.4
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.1e-96 357.5 316 58.5
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.1e-96 357.5 318 57.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.1e-96 357.5 375 51.5
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.2e-95 354.0 319 56.4
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.1e-95 353.2 262 65.6
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.6e-95 352.4 321 54.2
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 8.0e-95 351.3 352 52.8
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.8e-94 350.1 294 59.9
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 5.2e-94 348.6 355 53.0
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.1e-93 347.4 301 59.1
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 3.3e-93 345.9 356 52.5
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 3.3e-93 345.9 356 52.5
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 4.4e-93 345.5 337 52.8
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.4e-93 345.5 315 58.7
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.2e-92 343.2 317 59.0
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 4.8e-92 342.0 346 53.2
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 6.3e-92 341.7 319 57.4
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.8e-91 340.1 324 55.6
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 7.0e-91 338.2 316 56.3
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 7.0e-91 338.2 300 57.7
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.0e-90 336.7 286 61.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 5.9e-90 335.1 313 54.3
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.3e-89 334.0 320 51.9
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 2.2e-89 333.2 316 54.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 6.5e-89 331.6 212 75.5
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 6.5e-89 331.6 361 50.4
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.1e-88 330.9 235 67.7
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.7e-87 326.2 363 47.9
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.8e-86 323.6 282 57.8
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 2.0e-85 320.1 308 54.2
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 7.0e-83 311.6 327 52.3
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 2.8e-76 289.7 326 50.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.4e-75 286.6 209 67.5
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.6e-63 247.3 217 54.8
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.8e-63 246.5 226 58.4
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 4.0e-62 242.7 364 39.0
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 5.2e-62 242.3 269 49.8
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.2e-60 236.9 245 51.4
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 6.4e-60 235.3 236 52.5
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.9e-59 233.8 189 63.0
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 6.0e-58 228.8 237 51.5
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 5.0e-57 225.7 272 43.0
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-55 221.1 237 51.1
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.6e-55 220.7 317 41.6
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 8.3e-52 208.4 208 52.9
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.1e-51 208.0 220 53.6
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.1e-48 198.0 233 43.8
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-45 188.0 386 34.5
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 3.2e-43 179.9 258 44.6
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 6.0e-42 175.6 206 40.8
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 3.0e-41 173.3 317 38.2
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-39 167.9 189 50.8
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.6e-39 167.5 203 47.8
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.4e-38 164.5 163 52.8
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.3e-36 157.9 106 65.1
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 3.2e-35 153.3 201 39.3
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.1e-32 144.8 111 64.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.4e-27 127.9 181 42.0
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.3e-25 120.6 108 55.6
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 1.9e-24 117.5 283 30.0
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 6.0e-18 95.9 194 28.9
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.1e-11 75.1 188 28.7
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 5.5e-11 72.8 45 68.9
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 6.3e-07 59.3 76 42.1


User provided reference genes

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