Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 6.5e-246 853.6 422 100.0
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.2e-245 850.9 421 99.8
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 2.7e-236 821.6 420 96.0
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 3.6e-236 821.2 420 96.0
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 6.1e-236 820.5 420 95.7
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.4e-235 819.3 422 95.7
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 1.4e-235 819.3 420 95.5
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.8e-235 818.9 422 95.7
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.8e-235 818.9 420 95.5
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 3.0e-235 818.1 422 95.3
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 3.9e-235 817.8 420 95.2
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 5.1e-235 817.4 420 95.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 5.1e-235 817.4 421 94.8
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 5.1e-235 817.4 420 95.5
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.1e-234 816.2 420 95.0
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 1.5e-234 815.8 421 94.3
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.5e-234 815.8 420 95.2
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 3.3e-234 814.7 421 94.5
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 3.3e-234 814.7 421 95.0
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 3.3e-234 814.7 420 95.2
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 3.3e-234 814.7 421 94.5
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 3.3e-234 814.7 421 94.1
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 5.7e-234 813.9 420 94.8
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 5.7e-234 813.9 420 95.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 5.7e-234 813.9 421 95.0
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 9.7e-234 813.1 420 95.2
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 9.7e-234 813.1 416 95.9
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 9.7e-234 813.1 422 95.0
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.7e-233 812.4 421 94.1
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.7e-233 812.4 419 94.7
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 1.7e-233 812.4 420 94.8
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.7e-233 812.4 420 95.2
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.2e-233 812.0 421 94.5
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 2.8e-233 811.6 416 95.7
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.8e-233 811.6 421 94.5
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 3.7e-233 811.2 421 93.8
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 4.8e-233 810.8 418 94.7
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.8e-233 810.8 418 94.7
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 4.8e-233 810.8 421 93.8
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 4.8e-233 810.8 421 94.1
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 6.3e-233 810.4 420 94.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 8.2e-233 810.1 420 94.8
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.1e-232 809.7 421 94.1
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-232 809.7 421 93.8
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.1e-232 809.7 421 94.8
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.1e-232 809.7 421 93.8
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 1.4e-232 809.3 418 94.5
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.4e-232 809.3 421 94.1
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.8e-232 808.9 421 94.1
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 1.8e-232 808.9 421 93.8
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.8e-232 808.9 420 94.3
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 2.4e-232 808.5 421 94.1
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 3.1e-232 808.1 421 93.6
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.1e-232 808.1 419 93.8
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.1e-232 808.1 419 93.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 3.1e-232 808.1 418 94.5
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 4.1e-232 807.7 421 93.6
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 5.3e-232 807.4 421 93.6
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 5.3e-232 807.4 421 93.6
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 5.3e-232 807.4 420 94.5
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 5.3e-232 807.4 421 93.1
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 9.1e-232 806.6 421 93.6
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.5e-231 805.8 420 93.8
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 2.0e-231 805.4 421 93.3
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 2.0e-231 805.4 421 93.3
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 3.4e-231 804.7 416 94.5
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 3.4e-231 804.7 420 94.0
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 5.9e-231 803.9 418 93.8
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 7.7e-231 803.5 420 94.0
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.7e-231 803.5 420 94.0
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.7e-231 803.5 420 94.0
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.7e-231 803.5 420 94.0
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 1.0e-230 803.1 439 90.4
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.3e-230 802.7 418 94.3
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.7e-230 802.4 418 94.0
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.7e-230 802.4 420 92.6
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 2.2e-230 802.0 418 93.5
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 2.9e-230 801.6 438 91.1
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.9e-230 801.6 420 93.8
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 6.5e-230 800.4 442 90.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.6e-228 794.7 418 92.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.4e-227 792.7 417 93.3
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.8e-227 792.3 420 92.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.3e-227 792.0 416 92.5
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 3.0e-227 791.6 411 93.9
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 7.4e-226 786.9 414 93.2
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.7e-225 785.8 417 92.3
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.1e-224 783.1 476 83.0
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.8e-222 774.6 420 91.9
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.2e-220 769.6 419 88.3
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.4e-219 766.1 420 90.7
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 6.7e-219 763.8 384 96.6
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-217 759.6 420 86.9
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-217 759.6 420 86.9
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 8.2e-217 756.9 385 96.4
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.1e-216 756.5 418 87.6
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 4.7e-212 741.1 402 87.8
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 8.3e-209 730.3 384 93.0
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.5e-197 693.0 350 95.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 4.3e-197 691.4 401 81.3
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 6.8e-187 657.5 384 85.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 8.9e-187 657.1 402 78.4
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 5.8e-186 654.4 421 80.0
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.7e-185 651.7 317 98.1
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-182 643.7 367 84.7
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.6e-175 618.2 384 82.3
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.6e-175 618.2 384 82.3
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.4e-162 575.1 416 72.6
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.0e-158 562.4 418 72.5
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 6.6e-158 561.2 414 69.6
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.0e-154 549.7 269 97.8
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.3e-147 525.0 416 68.0
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 7.1e-144 514.6 409 67.7
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 9.3e-144 514.2 421 67.0
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.8e-140 502.7 420 66.7
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.6e-135 485.3 295 83.4
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.6e-127 460.3 250 91.2
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.5e-125 453.0 248 89.1
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.8e-113 412.5 229 90.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 7.2e-112 408.3 341 64.8
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.0e-110 402.9 420 56.7
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 7.4e-109 398.3 192 98.4
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 9.7e-109 397.9 196 95.4
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.5e-104 383.3 352 60.2
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-98 363.6 246 76.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.0e-93 347.1 175 92.0
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.3e-92 344.4 167 98.2
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.3e-92 342.0 183 87.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-90 337.0 293 64.2
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-85 321.2 154 97.4
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-84 317.4 314 58.9
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.1e-83 313.2 325 53.5
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.8e-78 297.4 421 46.3
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 2.4e-75 287.0 175 84.6
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 9.8e-69 265.0 172 80.2
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 6.4e-68 262.3 153 85.0
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 3.2e-67 260.0 417 41.7
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.5e-66 256.5 125 97.6
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.5e-64 250.4 152 83.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.6e-61 240.4 353 41.6
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 1.7e-60 237.7 129 86.0
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-52 211.5 123 86.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 3.9e-49 199.9 126 79.4
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 3.9e-49 199.9 105 92.4
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.5e-45 188.0 280 44.6
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.8e-45 186.0 138 69.6
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 9.9e-45 185.3 113 83.2
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.6e-34 151.4 74 95.9
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 1.8e-33 147.9 98 78.6
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-28 130.6 75 88.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.6e-26 124.8 73 87.7
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 2.1e-26 124.4 138 53.6
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.0e-26 122.9 58 96.6
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-23 114.8 59 89.8
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-22 111.7 56 96.4
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 7.6e-21 105.9 77 75.3
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 9.3e-19 99.0 49 95.9
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-16 92.0 47 91.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-16 91.3 63 71.4
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 3.7e-15 87.0 49 85.7
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-14 85.1 59 71.2
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 7.9e-10 69.3 53 71.7
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 7.9e-10 69.3 53 71.7
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 6.3e-07 59.7 62 59.7


User provided reference genes

Program Settings