Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 9.2e-59 229.9 111 100.0
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.2e-45 186.4 96 88.5
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 8.4e-36 153.7 96 71.9
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-30 136.7 96 61.5
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.4e-30 136.3 96 63.5
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 2.6e-29 132.1 96 61.5
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-28 129.4 96 60.4
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.9e-28 127.9 95 58.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.9e-27 125.9 100 59.0
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.9e-27 125.9 100 55.0
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.2e-27 125.2 100 57.0
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 9.3e-27 123.6 100 57.0
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.3e-27 123.6 96 57.3
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.3e-27 123.6 96 57.3
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.7e-26 122.1 96 57.3
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 2.7e-26 122.1 100 57.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.8e-25 119.4 100 57.0
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 3.0e-25 118.6 103 56.3
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 3.9e-25 118.2 96 57.3
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 5.1e-25 117.9 97 55.7
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 5.1e-25 117.9 98 53.1
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 6.7e-25 117.5 100 56.0
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 8.7e-25 117.1 100 57.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 8.7e-25 117.1 100 55.0
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 4.8e-23 111.3 98 56.1
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-22 110.2 97 54.6
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.1e-22 110.2 102 52.9
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.8e-22 109.4 100 49.0
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.1e-22 108.6 101 53.5
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 4.0e-22 108.2 98 54.1
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 4.0e-22 108.2 97 55.7
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 6.9e-22 107.5 96 55.2
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.0e-21 105.9 97 55.7
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.0e-21 105.9 96 54.2
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.6e-21 105.5 100 50.0
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 4.5e-21 104.8 96 52.1
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 4.5e-21 104.8 98 53.1
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 5.8e-21 104.4 97 52.6
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.0e-20 103.6 97 51.5
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.3e-20 103.2 97 52.6
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.7e-20 102.8 101 52.5
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.2e-20 102.4 93 57.0
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.2e-20 102.4 96 53.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 2.5e-19 99.0 95 52.6
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 3.2e-19 98.6 100 50.0
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 5.5e-19 97.8 95 52.6
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.2e-18 96.7 90 51.1
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.1e-18 95.9 88 50.0
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.1e-18 95.9 88 50.0
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.7e-18 95.5 95 51.6
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 3.5e-18 95.1 100 48.0
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 6.0e-18 94.4 100 50.0
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 6.0e-18 94.4 104 49.0
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.9e-18 94.0 92 50.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.9e-18 94.0 92 50.0
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 7.9e-18 94.0 107 44.9
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.3e-17 92.4 88 51.1
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.3e-17 92.4 88 51.1
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 2.3e-17 92.4 90 55.6
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.3e-17 92.4 88 51.1
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 5.1e-17 91.3 91 54.9
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 5.1e-17 91.3 101 46.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.5e-16 89.7 102 44.1
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.5e-16 89.7 88 51.1
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 1.5e-16 89.7 101 45.5
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.9e-16 89.4 90 48.9
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.5e-16 89.0 100 41.0
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 5.7e-16 87.8 103 45.6
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 5.7e-16 87.8 88 47.7
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 7.4e-16 87.4 108 41.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.3e-15 86.7 97 47.4
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.3e-15 86.7 91 50.5
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.3e-15 86.7 86 45.3
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.6e-15 86.3 102 40.2
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 2.2e-15 85.9 90 50.0
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 6.3e-15 84.3 99 43.4
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 6.3e-15 84.3 88 52.3
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.1e-14 83.6 88 47.7
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.1e-14 83.6 88 47.7
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 1.8e-14 82.8 101 44.6
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 4.1e-14 81.6 90 42.2
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 9.0e-14 80.5 88 47.7
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.2e-13 80.1 95 44.2
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 2.0e-13 79.3 95 43.2
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.0e-13 79.3 106 41.5
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.4e-13 78.6 91 42.9
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 5.9e-13 77.8 90 43.3
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.6e-13 77.4 106 40.6
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 7.6e-13 77.4 88 43.2
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.3e-12 76.6 96 43.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.7e-12 76.3 95 42.1
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.7e-12 76.3 95 41.1
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.7e-12 76.3 95 41.1
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 2.2e-12 75.9 95 45.3
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 2.9e-12 75.5 80 43.8
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.9e-12 75.5 106 40.6
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 2.9e-12 75.5 98 42.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 3.8e-12 75.1 100 41.0
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 5.0e-12 74.7 96 42.7
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 5.0e-12 74.7 115 36.5
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 6.5e-12 74.3 96 41.7
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 8.5e-12 73.9 91 42.9
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 8.5e-12 73.9 67 50.7
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.4e-11 73.2 96 41.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.4e-11 73.2 102 38.2
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.9e-11 72.8 102 39.2
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.5e-11 72.4 96 40.6
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 3.2e-11 72.0 92 41.3
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 4.2e-11 71.6 93 37.6
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 4.2e-11 71.6 99 41.4
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 4.2e-11 71.6 99 41.4
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 5.5e-11 71.2 99 40.4
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 5.5e-11 71.2 94 40.4
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 5.5e-11 71.2 94 40.4
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 5.5e-11 71.2 99 40.4
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 5.5e-11 71.2 94 40.4
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.6e-10 69.7 98 38.8
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.7e-10 68.9 116 35.3
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 4.6e-10 68.2 120 33.3
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 4.6e-10 68.2 94 41.5
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 7.9e-10 67.4 88 43.2
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.7e-09 64.3 91 36.3
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 1.5e-08 63.2 52 53.8
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.5e-08 62.4 98 35.7
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.4e-08 60.8 94 34.0
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 9.7e-08 60.5 58 48.3
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 2.8e-07 58.9 88 34.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.8e-07 58.9 102 35.3
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 4.8e-07 58.2 88 37.5
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.8e-07 58.2 117 32.5
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 9.1e-06 53.9 86 36.0


User provided reference genes

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