Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.5e-71 272.7 134 100.0
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.5e-71 272.7 134 100.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 4.8e-70 267.7 134 97.8
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.3e-70 267.3 134 97.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.4e-69 266.2 134 97.0
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.8e-69 265.8 134 95.5
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 2.4e-69 265.4 134 97.8
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.4e-69 265.4 134 97.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 4.1e-69 264.6 134 97.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 4.1e-69 264.6 134 97.0
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 4.1e-69 264.6 134 96.3
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 5.3e-69 264.2 134 96.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 5.3e-69 264.2 134 95.5
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.0e-69 263.8 134 96.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.0e-69 263.8 134 96.3
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 7.0e-69 263.8 134 97.0
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 7.0e-69 263.8 134 96.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 9.1e-69 263.5 134 95.5
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 9.1e-69 263.5 134 95.5
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 9.1e-69 263.5 134 94.8
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.2e-68 263.1 134 96.3
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.2e-68 263.1 134 95.5
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.5e-68 262.7 134 96.3
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.5e-68 262.7 134 96.3
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.5e-68 262.7 134 94.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.5e-68 262.7 134 94.0
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.5e-68 262.7 134 95.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.0e-68 262.3 134 95.5
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.6e-68 261.9 134 93.3
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 3.5e-68 261.5 134 94.8
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 3.5e-68 261.5 134 95.5
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 3.5e-68 261.5 134 94.8
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 3.5e-68 261.5 134 94.0
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 4.5e-68 261.2 134 94.0
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 4.5e-68 261.2 134 94.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 4.5e-68 261.2 134 94.8
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 5.9e-68 260.8 134 93.3
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 5.9e-68 260.8 134 94.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 5.9e-68 260.8 134 94.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.9e-68 260.8 134 95.5
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 5.9e-68 260.8 134 93.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.0e-67 260.0 134 94.8
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.0e-67 260.0 134 93.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.3e-67 259.6 134 93.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.3e-67 259.6 134 94.0
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.7e-67 259.2 136 95.6
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.7e-67 259.2 134 94.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.7e-67 259.2 134 93.3
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.9e-67 258.5 134 94.8
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.9e-67 258.5 134 94.8
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 2.9e-67 258.5 134 93.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 2.9e-67 258.5 134 93.3
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.9e-67 258.5 134 92.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.8e-67 258.1 134 94.0
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 5.0e-67 257.7 134 93.3
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 5.0e-67 257.7 134 92.5
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 5.0e-67 257.7 134 93.3
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 6.5e-67 257.3 134 93.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.5e-67 257.3 134 93.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 6.5e-67 257.3 134 93.3
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 8.5e-67 256.9 134 92.5
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 8.5e-67 256.9 134 92.5
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 8.5e-67 256.9 134 93.3
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 8.5e-67 256.9 134 93.3
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 8.5e-67 256.9 134 92.5
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.5e-66 256.1 134 92.5
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.5e-66 256.1 134 92.5
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-66 256.1 134 93.3
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.9e-66 255.8 134 92.5
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.9e-66 255.8 134 92.5
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.9e-66 255.8 134 91.8
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.9e-66 255.8 134 92.5
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.5e-66 255.4 134 90.3
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.2e-66 255.0 134 91.0
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.2e-66 255.0 134 91.8
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 3.2e-66 255.0 134 91.8
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 4.2e-66 254.6 134 92.5
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 5.5e-66 254.2 134 92.5
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 7.2e-66 253.8 134 90.3
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-65 253.1 134 92.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-65 253.1 134 92.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-65 253.1 134 92.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 2.1e-65 252.3 134 89.6
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.1e-65 252.3 134 90.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 2.7e-65 251.9 134 90.3
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 2.7e-65 251.9 134 91.8
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 3.6e-65 251.5 134 89.6
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 6.1e-65 250.8 134 91.8
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 6.1e-65 250.8 134 90.3
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 8.0e-65 250.4 134 90.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.0e-65 250.4 134 90.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.0e-65 250.4 134 90.3
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 8.0e-65 250.4 134 91.0
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.0e-64 250.0 134 88.8
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.0e-64 250.0 134 89.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.0e-64 250.0 134 89.6
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.3e-64 248.8 134 88.8
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.3e-64 248.8 134 88.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 2.3e-64 248.8 134 88.8
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.3e-64 248.8 134 88.8
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.3e-64 248.8 134 88.8
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.3e-64 248.8 134 88.8
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.0e-64 248.4 134 89.6
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.0e-64 248.1 134 90.3
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 6.7e-64 247.3 134 88.1
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 6.7e-64 247.3 134 89.6
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 6.7e-64 247.3 134 90.3
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.8e-64 246.9 134 89.6
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.7e-63 244.2 134 88.8
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 5.7e-63 244.2 134 86.6
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 5.7e-63 244.2 134 88.8
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 4.8e-62 241.1 134 87.3
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.5e-58 229.6 134 82.1
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 3.2e-58 228.4 134 85.8
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 7.2e-58 227.3 134 85.1
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 7.2e-58 227.3 136 81.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 3.1e-53 211.8 134 79.1
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 4.1e-53 211.5 134 79.9
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.6e-52 209.5 136 77.9
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.3e-51 206.5 134 76.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.4e-48 196.4 134 72.4
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.8e-48 196.1 134 76.9
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.7e-47 191.0 135 68.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.7e-47 191.0 135 68.1
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.4e-40 169.9 111 77.5
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 9.8e-39 163.7 135 63.0
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 3.7e-38 161.8 84 89.3
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.7e-38 161.8 134 63.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 8.3e-38 160.6 104 74.0
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-37 160.2 127 65.4
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.0e-36 156.0 84 88.1
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.2e-28 130.2 136 54.4
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 5.6e-26 121.3 136 50.0
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.2e-25 120.2 128 55.5
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-21 106.3 61 80.3
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 3.2e-21 105.5 61 78.7
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 3.5e-20 102.1 68 76.5
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 3.5e-20 102.1 68 76.5
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.3e-19 100.1 59 78.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.5e-15 86.7 54 68.5
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.7e-14 83.2 53 71.7
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.0e-07 59.7 28 89.3
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.6e-07 59.3 28 92.9
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 3.4e-07 58.9 43 69.8
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.4e-07 58.9 28 92.9
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 4.4e-07 58.5 28 89.3
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 4.4e-07 58.5 28 85.7
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.6e-07 57.8 28 89.3


User provided reference genes

Program Settings