Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.6e-112 408.7 202 100.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 3.5e-48 195.7 199 51.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.6e-45 186.8 199 51.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.6e-45 186.8 199 51.3
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.1e-45 186.4 199 50.3
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 4.7e-45 185.3 198 51.0
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 6.2e-45 184.9 199 50.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 8.1e-45 184.5 198 50.0
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.8e-44 183.3 196 48.5
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.4e-44 183.0 200 50.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.4e-44 183.0 199 49.2
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.4e-44 183.0 199 49.2
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 4.0e-44 182.2 201 50.2
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 5.2e-44 181.8 197 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 5.2e-44 181.8 195 49.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 5.2e-44 181.8 198 50.0
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 5.2e-44 181.8 198 50.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 5.2e-44 181.8 201 51.2
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 5.2e-44 181.8 197 50.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 6.8e-44 181.4 193 50.8
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 6.8e-44 181.4 199 49.7
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 6.8e-44 181.4 199 49.2
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 6.8e-44 181.4 199 50.3
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 6.8e-44 181.4 199 49.2
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 6.8e-44 181.4 196 49.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 6.8e-44 181.4 197 49.7
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 8.9e-44 181.0 199 49.2
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 8.9e-44 181.0 189 50.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 8.9e-44 181.0 199 48.7
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 8.9e-44 181.0 201 50.2
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.2e-43 180.6 193 52.3
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 1.2e-43 180.6 199 49.7
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.2e-43 180.6 199 49.7
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.2e-43 180.6 199 48.2
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.2e-43 180.6 197 49.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.5e-43 180.3 199 49.2
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.5e-43 180.3 194 50.5
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.5e-43 180.3 199 48.7
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.5e-43 180.3 194 51.0
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.5e-43 180.3 199 50.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.5e-43 180.3 199 50.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.5e-43 180.3 201 50.2
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.0e-43 179.9 193 49.7
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.0e-43 179.9 198 50.0
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 2.0e-43 179.9 198 50.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.0e-43 179.9 198 50.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.0e-43 179.9 198 50.0
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.0e-43 179.9 198 50.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.0e-43 179.9 199 48.7
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.0e-43 179.9 199 48.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.0e-43 179.9 197 47.7
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.0e-43 179.9 201 49.8
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 2.0e-43 179.9 191 49.7
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.6e-43 179.5 197 48.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.6e-43 179.5 199 48.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 3.4e-43 179.1 199 49.7
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.4e-43 179.1 199 46.2
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 3.4e-43 179.1 201 47.3
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 4.4e-43 178.7 198 49.5
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 4.4e-43 178.7 197 49.7
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 4.4e-43 178.7 197 49.7
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.4e-43 178.7 195 51.3
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 4.4e-43 178.7 195 51.3
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 4.4e-43 178.7 199 48.2
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 4.4e-43 178.7 201 49.8
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 4.4e-43 178.7 199 48.2
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.4e-43 178.7 199 48.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 5.8e-43 178.3 197 49.2
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.8e-43 178.3 195 51.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 7.6e-43 177.9 193 50.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 7.6e-43 177.9 197 49.7
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 7.6e-43 177.9 193 50.3
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 9.9e-43 177.6 198 49.0
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 9.9e-43 177.6 199 48.2
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 9.9e-43 177.6 193 49.2
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 9.9e-43 177.6 193 51.3
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 9.9e-43 177.6 191 49.7
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.3e-42 177.2 198 49.5
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.3e-42 177.2 197 48.2
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.3e-42 177.2 202 48.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.7e-42 176.8 197 48.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.7e-42 176.8 197 47.7
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.7e-42 176.8 191 49.2
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.7e-42 176.8 197 47.7
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.2e-42 176.4 197 48.2
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 2.2e-42 176.4 199 49.2
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-42 176.0 199 47.7
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-42 176.0 199 47.7
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-42 176.0 199 47.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 2.9e-42 176.0 190 50.5
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.9e-42 176.0 195 50.8
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 3.8e-42 175.6 199 47.2
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.8e-42 175.6 198 48.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.8e-42 175.6 193 48.7
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.9e-42 175.3 198 48.0
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 4.9e-42 175.3 193 49.7
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 4.9e-42 175.3 199 49.7
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.4e-42 174.9 199 48.2
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 8.4e-42 174.5 197 47.7
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.1e-41 174.1 199 48.2
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.4e-41 173.7 197 49.2
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.9e-41 173.3 197 49.2
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.9e-41 173.3 197 49.2
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.9e-41 173.3 197 49.2
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.9e-41 173.3 199 48.7
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.9e-41 173.3 197 48.2
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 2.4e-41 172.9 201 48.3
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 3.2e-41 172.6 199 48.2
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.2e-41 172.6 199 46.2
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 7.1e-41 171.4 199 46.7
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.6e-40 170.2 197 46.2
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.1e-40 169.9 178 50.6
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.1e-40 169.9 197 48.7
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.1e-40 169.9 190 46.8
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 6.0e-40 168.3 184 49.5
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 6.6e-39 164.9 198 48.5
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.1e-38 164.1 178 50.0
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.5e-38 163.7 197 44.2
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 4.3e-38 162.2 174 51.7
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 5.6e-38 161.8 178 49.4
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 9.6e-38 161.0 187 43.3
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.8e-37 158.7 202 48.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.4e-36 157.1 198 44.4
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 3.1e-36 156.0 200 47.5
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.0e-36 155.6 199 49.7
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.0e-31 141.0 140 53.6
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 3.4e-27 125.9 189 44.4
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.6e-27 124.8 145 44.1
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.3e-26 124.0 136 50.0
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 3.8e-26 122.5 166 46.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.8e-21 106.3 72 65.3
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 2.0e-19 100.1 102 52.9
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 5.1e-15 85.5 61 62.3
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 8.2e-13 78.2 54 66.7
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 4.1e-12 75.9 46 71.7
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 5.8e-11 72.0 70 47.1
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.5e-10 68.6 198 29.8
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.1e-08 63.5 70 41.4
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 2.1e-08 63.5 70 42.9
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.1e-06 57.8 87 39.1


User provided reference genes

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