Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 0.0e+00 1270.0 644 100.0
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 2.4e-260 902.1 484 96.1
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 3.8e-229 798.5 483 86.3
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 9.0e-207 724.2 501 75.6
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 8.2e-200 701.0 457 76.6
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.8e-199 699.9 490 73.9
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 3.1e-199 699.1 487 74.5
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 5.3e-199 698.4 492 73.6
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 4.5e-198 695.3 439 78.8
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 7.7e-198 694.5 472 74.8
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.7e-197 693.3 501 73.3
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 2.9e-197 692.6 492 73.4
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 4.2e-196 688.7 486 73.9
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 1.2e-195 687.2 444 78.4
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 1.2e-195 687.2 505 70.5
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 1.6e-195 686.8 486 72.6
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 4.7e-195 685.3 505 70.1
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 6.1e-195 684.9 494 71.9
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 1.0e-194 684.1 486 71.8
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 1.8e-194 683.3 498 71.5
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 1.8e-194 683.3 495 71.7
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 2.3e-194 682.9 428 78.7
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 6.7e-194 681.4 482 72.8
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 2.0e-193 679.9 481 73.4
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 2.6e-193 679.5 472 72.2
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 3.3e-193 679.1 510 71.0
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 5.7e-193 678.3 435 76.6
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 7.4e-193 677.9 494 72.1
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 4.8e-192 675.2 452 75.0
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 4.8e-192 675.2 501 70.7
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 4.8e-192 675.2 491 70.9
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 8.2e-192 674.5 484 72.1
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 1.4e-191 673.7 484 72.1
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 5.3e-191 671.8 441 76.6
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 5.3e-191 671.8 495 70.7
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 1.5e-190 670.2 471 71.8
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.5e-190 670.2 502 70.1
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 1.5e-190 670.2 492 69.3
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 2.6e-190 669.5 492 70.5
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 4.5e-190 668.7 479 72.4
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 4.5e-190 668.7 481 71.1
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 7.7e-190 667.9 493 70.8
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 1.0e-189 667.5 468 72.9
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.3e-189 667.2 442 74.9
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 1.3e-189 667.2 469 72.7
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 2.2e-189 666.4 498 70.3
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 2.2e-189 666.4 481 72.3
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 2.2e-189 666.4 502 70.1
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 2.9e-189 666.0 457 71.6
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 5.0e-189 665.2 482 70.1
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 8.5e-189 664.5 468 72.6
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 1.4e-188 663.7 468 72.2
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 2.5e-188 662.9 494 71.5
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 4.2e-188 662.1 503 68.6
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.2e-188 661.4 477 70.4
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 9.4e-188 661.0 471 70.3
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 9.4e-188 661.0 491 69.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 1.2e-187 660.6 468 71.2
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.7e-187 659.4 448 74.1
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 6.1e-187 658.3 429 78.1
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 6.1e-187 658.3 441 75.1
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 6.1e-187 658.3 467 71.7
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 8.0e-187 657.9 505 68.5
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.0e-186 657.5 429 76.5
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 1.4e-186 657.1 440 73.2
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.8e-186 656.8 448 73.9
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 1.8e-186 656.8 448 74.1
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.1e-185 654.1 467 71.1
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.5e-185 653.7 478 70.5
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 5.7e-185 651.7 473 70.6
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 1.3e-184 650.6 472 70.3
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 2.2e-184 649.8 490 68.0
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 8.2e-184 647.9 506 67.6
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 8.2e-184 647.9 472 70.1
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.1e-183 647.5 490 68.4
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 1.8e-183 646.7 480 69.0
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 4.1e-183 645.6 441 74.8
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 4.1e-183 645.6 441 74.8
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 5.3e-183 645.2 475 69.5
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 5.3e-183 645.2 428 73.8
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 5.3e-183 645.2 472 69.9
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 7.0e-183 644.8 481 69.2
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 1.2e-182 644.0 448 73.0
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 1.2e-182 644.0 448 73.0
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.6e-182 643.7 433 74.4
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 1.6e-182 643.7 453 72.2
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 2.0e-182 643.3 473 70.4
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 4.5e-182 642.1 473 69.3
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 7.7e-182 641.3 478 69.0
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.0e-181 641.0 482 69.1
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-181 640.6 500 67.6
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 1.7e-181 640.2 448 71.0
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 2.2e-181 639.8 428 75.9
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 1.5e-180 637.1 442 71.7
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 9.4e-180 634.4 474 67.9
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 4.7e-179 632.1 573 60.6
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 7.5e-177 624.8 444 71.2
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 9.7e-177 624.4 438 71.0
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.7e-176 623.6 437 70.7
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.6e-174 617.1 425 73.6
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 1.0e-173 614.4 505 63.2
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 8.0e-171 604.7 501 62.5
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.2e-168 596.7 445 66.3
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.6e-166 590.5 470 64.7
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 3.8e-165 585.9 433 66.1
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 2.1e-163 580.1 434 65.4
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 8.0e-163 578.2 472 62.1
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 1.0e-162 577.8 446 67.5
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 1.7e-157 560.5 482 62.0
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.4e-151 540.0 317 84.2
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.1e-148 531.2 444 58.1
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.8e-146 523.9 482 61.8
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.0e-146 522.7 372 68.5
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 2.3e-141 506.9 461 56.2
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.0e-137 493.8 430 60.9
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 2.9e-136 490.0 447 60.2
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 3.9e-133 479.6 501 49.7
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 7.3e-132 475.3 482 51.7
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 2.4e-127 460.3 420 59.3
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 4.0e-114 416.4 445 54.4
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.1e-99 367.5 255 71.4
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 1.1e-87 328.6 395 48.9
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.4e-82 310.8 425 39.3
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 3.1e-74 283.9 434 44.0
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 5.3e-74 283.1 265 60.8
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 5.9e-73 279.6 225 62.7
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 1.7e-72 278.1 205 71.2
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 1.5e-68 265.0 333 49.8
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 8.5e-64 249.2 174 71.8
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 3.2e-63 247.3 460 32.6
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 1.5e-60 238.4 302 40.4
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 8.3e-51 206.1 163 67.5
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 5.5e-47 193.4 394 36.0
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 2.9e-40 171.0 131 69.5
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.1e-34 152.5 143 58.7
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.0e-33 146.7 96 70.8
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.7e-24 118.6 67 83.6
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 3.6e-22 110.9 78 66.7
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 3.7e-19 100.9 70 67.1
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 4.9e-19 100.5 57 80.7
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.6e-17 95.5 148 45.9
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 6.6e-16 90.1 85 58.8
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 6.6e-16 90.1 61 72.1
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 4.7e-14 84.0 49 81.6
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 4.7e-14 84.0 49 81.6
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 2.6e-12 78.2 62 66.1
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 2.9e-11 74.7 68 63.2
QL93p0151_0017 Quercus lobata HOM05D000003 ORTHO05D000006 3.5e-09 67.8 80 43.8
QL02p065046 Quercus lobata HOM05D000003 ORTHO05D000006 6.6e-08 63.5 55 50.9
QL03p012049 Quercus lobata HOM05D000003 ORTHO05D000006 6.6e-08 63.5 56 53.6
QL12p021682 Quercus lobata HOM05D000003 ORTHO05D000006 6.6e-08 63.5 79 44.3
QL04p086524 Quercus lobata HOM05D000003 ORTHO05D000006 8.7e-08 63.2 56 51.8
QL07p025043 Quercus lobata HOM05D000003 ORTHO05D000006 8.7e-08 63.2 57 50.9
Atru.chr10.299 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 62.8 73 42.5
QL01p029685 Quercus lobata HOM05D000003 ORTHO05D000126 1.5e-07 62.4 56 55.4
QL05p068740 Quercus lobata HOM05D000003 ORTHO05D000004 2.5e-07 61.6 56 50.0
QL05p069113 Quercus lobata HOM05D000003 ORTHO05D000004 2.5e-07 61.6 56 50.0
QL08p004291 Quercus lobata HOM05D000003 ORTHO05D000006 2.5e-07 61.6 57 54.4
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 2.5e-07 61.6 55 49.1
RcHm_v2.0_Chr4g0385261 Rosa chinensis HOM05D000003 ORTHO05D000006 3.3e-07 61.2 78 37.2
Atru.chr3.1852 Acer truncatum HOM05D000003 ORTHO05D000126 5.6e-07 60.5 56 48.2
Atru.chr5.2672 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-07 60.5 52 51.9
Atru.chr13.2083 Acer truncatum HOM05D000003 ORTHO05D000006 7.3e-07 60.1 109 35.8
RcHm_v2.0_Chr4g0398301 Rosa chinensis HOM05D000003 ORTHO05D000006 9.6e-07 59.7 56 50.0
TWI12G0720 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.6e-07 59.7 74 43.2
TWI53G0186 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.3e-06 59.3 72 38.9
CANSAT78G0079 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-06 58.9 44 56.8
Prupe.4G011200 Prunus persica HOM05D000003 ORTHO05D000004 1.6e-06 58.9 78 42.3
QL07p019949 Quercus lobata HOM05D000003 ORTHO05D000006 1.6e-06 58.9 56 48.2
Atru.chr12.2231 Acer truncatum HOM05D000003 ORTHO05D000006 2.8e-06 58.2 76 40.8
QL09p053695 Quercus lobata HOM05D000003 ORTHO05D000006 4.8e-06 57.4 126 31.7
Atru.chr1.764 Acer truncatum HOM05D000003 ORTHO05D000006 6.2e-06 57.0 44 56.8
Atru.ctg24.7 Acer truncatum HOM05D000003 ORTHO05D000006 6.2e-06 57.0 55 49.1
Lju114P0T5 Lonicera japonica HOM05D000003 ORTHO05D000006 6.2e-06 57.0 68 41.2
Atru.chr10.138 Acer truncatum HOM05D000003 ORTHO05D000006 8.1e-06 56.6 45 51.1
Atru.chr13.2518 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-06 56.6 71 39.4
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 8.1e-06 56.6 76 40.8
Cc00_g10420 Coffea canephora HOM05D000003 ORTHO05D000126 8.1e-06 56.6 43 55.8
Hma1.2p1_0881F.1_g231900 Hydrangea macrophylla HOM05D000003 ORTHO05D000006 8.1e-06 56.6 79 36.7
Manes.13G023901 Manihot esculenta HOM05D000003 ORTHO05D000006 8.1e-06 56.6 45 46.7
Medtr0042s0130 Medicago truncatula HOM05D000003 ORTHO05D000006 8.1e-06 56.6 56 46.4
QL07p031105 Quercus lobata HOM05D000003 ORTHO05D000006 8.1e-06 56.6 56 42.9
SEGI_20498 Sequoiadendron giganteum HOM05D037692 ORTHO05D385547 8.1e-06 56.6 47 59.6


User provided reference genes

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