Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-244 849.4 425 100.0
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 2.4e-240 835.1 426 98.4
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.8e-227 792.3 425 93.4
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 4.5e-223 777.7 426 91.3
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 4.7e-220 767.7 426 89.2
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 8.3e-217 756.9 425 88.2
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 1.6e-215 752.7 427 88.5
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 5.9e-215 750.7 426 87.8
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.7e-214 749.2 425 87.8
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 3.0e-214 748.4 425 87.5
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 6.6e-214 747.3 425 87.3
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 6.6e-214 747.3 426 87.6
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 6.6e-214 747.3 426 86.9
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 6.6e-214 747.3 428 88.3
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.5e-213 746.1 425 87.1
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 5.6e-213 744.2 425 87.5
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.1e-212 742.3 429 88.8
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.1e-212 742.3 427 88.3
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 6.2e-212 740.7 425 86.6
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 6.2e-212 740.7 428 86.7
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 8.0e-212 740.3 427 88.1
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.1e-211 740.0 428 87.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 3.1e-211 738.4 427 86.2
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 3.4e-210 734.9 428 86.9
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 5.8e-210 734.2 425 86.1
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 9.8e-210 733.4 428 86.0
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 2.2e-209 732.3 429 85.8
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 2.2e-209 732.3 432 85.9
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.9e-209 731.9 432 85.6
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.7e-209 731.5 428 86.4
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 3.7e-209 731.5 428 86.4
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.1e-208 729.9 400 90.2
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 1.9e-208 729.2 428 86.2
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 4.1e-208 728.0 429 85.5
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 9.2e-208 726.9 426 86.4
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 9.2e-208 726.9 433 85.7
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.2e-207 726.5 432 85.4
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.2e-207 726.5 425 84.7
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.2e-207 726.5 428 86.0
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.2e-207 726.5 426 85.0
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.6e-207 726.1 432 85.9
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.6e-207 726.1 402 89.1
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.0e-207 725.7 432 85.0
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 2.0e-207 725.7 425 84.2
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 7.8e-207 723.8 426 86.2
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 7.8e-207 723.8 431 85.2
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 1.3e-206 723.0 428 85.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.5e-205 719.5 428 85.0
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.9e-205 719.2 418 85.4
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 5.6e-205 717.6 426 84.3
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 2.8e-204 715.3 425 84.5
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 6.2e-204 714.1 411 86.4
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.1e-203 713.4 414 85.7
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.4e-203 713.0 426 84.3
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.4e-203 713.0 401 88.0
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.8e-203 712.6 426 84.5
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 3.1e-203 711.8 432 83.3
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.5e-202 709.5 427 83.6
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.6e-202 708.8 426 83.1
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 4.4e-202 708.0 368 95.1
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.7e-201 706.1 425 83.8
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.7e-201 706.1 428 82.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.7e-201 706.1 428 82.9
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.9e-201 705.3 395 87.3
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 2.9e-201 705.3 395 88.4
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 4.9e-201 704.5 379 91.6
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 6.4e-201 704.1 412 85.0
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 1.9e-200 702.6 394 87.6
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.4e-200 702.2 431 82.4
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 3.2e-200 701.8 427 82.7
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 3.2e-200 701.8 425 83.5
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 5.4e-200 701.0 431 82.4
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.2e-199 699.9 426 83.8
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 7.8e-199 697.2 396 86.6
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 1.7e-198 696.0 433 81.3
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 2.3e-198 695.7 368 93.8
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 3.0e-198 695.3 398 86.2
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 3.0e-198 695.3 420 82.4
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 3.9e-198 694.9 430 80.5
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.1e-197 693.3 395 88.4
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 1.9e-197 692.6 430 80.7
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.9e-197 692.6 428 81.5
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 3.3e-197 691.8 433 80.8
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 7.3e-197 690.6 432 80.3
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.6e-196 689.5 445 79.6
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 2.1e-196 689.1 430 80.7
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 3.1e-195 685.3 428 80.8
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 4.0e-195 684.9 386 86.5
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-194 683.3 432 80.3
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 3.4e-194 681.8 402 83.8
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 4.4e-194 681.4 434 80.0
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 4.4e-194 681.4 431 80.5
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 7.6e-194 680.6 431 80.3
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 7.6e-194 680.6 428 80.4
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 3.8e-193 678.3 431 80.0
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 8.4e-193 677.2 380 87.4
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.4e-192 676.4 426 81.0
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 3.2e-192 675.2 402 82.8
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 3.2e-192 675.2 439 78.6
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 2.1e-191 672.5 431 79.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 8.7e-190 667.2 494 70.4
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 4.3e-189 664.8 397 83.4
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 2.1e-188 662.5 396 82.1
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 3.6e-188 661.8 379 88.7
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 2.4e-187 659.1 397 81.9
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 7.1e-184 647.5 374 86.1
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 6.0e-183 644.4 434 77.4
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.0e-182 643.7 434 77.6
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.7e-182 642.9 368 86.7
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 3.1e-179 632.1 402 74.1
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.4e-178 628.6 409 75.6
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 5.4e-176 621.3 392 77.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 7.9e-175 617.5 396 76.5
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.5e-173 612.5 383 77.5
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 5.3e-163 578.2 385 71.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.5e-159 565.5 387 74.9
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 3.5e-159 565.5 337 84.0
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 6.0e-159 564.7 350 78.6
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 6.7e-158 561.2 381 74.8
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 3.3e-157 558.9 378 70.9
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.9e-152 543.1 369 71.8
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 7.7e-146 521.2 378 65.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 1.2e-138 497.3 288 83.7
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.5e-130 469.2 440 59.5
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 2.9e-129 466.1 299 78.6
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.0e-113 414.5 267 80.5
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 4.0e-110 402.5 280 75.0
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 4.3e-72 276.2 358 42.5
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 6.2e-71 272.3 334 43.7
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.3e-68 264.6 183 77.0
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 3.4e-53 213.4 118 87.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 1.4e-46 191.4 113 80.5
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 2.0e-32 144.4 84 82.1
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 2.4e-30 137.5 84 79.8
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 2.0e-29 134.4 84 77.4
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 5.9e-29 132.9 125 61.6
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 3.3e-24 117.1 57 93.0
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 6.3e-23 112.8 99 62.6
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.8e-22 111.3 76 72.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 7.4e-16 89.4 195 32.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 9.7e-16 89.0 51 84.3
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 6.1e-10 69.7 40 77.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 1.5e-08 65.1 66 54.5
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 6.3e-07 59.7 73 50.7


User provided reference genes

Program Settings