Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18727 Corylus avellana HOM05D000234 ORTHO05D044811 1.4e-89 333.2 200 100.0
Haze_23501 Corylus avellana HOM05D000234 ORTHO05D000335 4.9e-18 95.5 183 46.4
CiPaw.13G143000 Carya illinoinensis HOM05D000234 ORTHO05D000335 1.1e-17 94.4 187 41.7
CiPaw.13G142700 Carya illinoinensis HOM05D000234 ORTHO05D000335 2.1e-16 90.1 200 39.0
Cfa010114 Carpinus fangiana HOM05D000234 ORTHO05D000335 2.3e-15 86.7 190 44.7
Lalb_Chr03g0027831 Lupinus albus HOM05D000234 ORTHO05D000335 1.6e-13 80.5 64 60.9
Glyma.11G190900 Glycine max HOM05D000234 ORTHO05D000335 1.1e-12 77.8 98 44.9
CiPaw.14G105300 Carya illinoinensis HOM05D000234 ORTHO05D000335 1.4e-12 77.4 69 56.5
FAN11G3679 Fragaria x ananassa HOM05D000234 ORTHO05D000335 2.4e-12 76.6 70 52.9
QL01p014201 Quercus lobata HOM05D000234 ORTHO05D000335 3.1e-12 76.3 66 57.6
arahy.Tifrunner.gnm1.ann1.SWNJ62 Arachis hypogaea HOM05D000234 ORTHO05D000335 4.0e-12 75.9 169 46.2
Prupe.6G115400 Prunus persica HOM05D000234 ORTHO05D000335 4.0e-12 75.9 72 52.8
Dinv12559 Davidia involucrata HOM05D000234 ORTHO05D000335 6.8e-12 75.1 83 45.8
FvH4_3g30202 Fragaria vesca HOM05D000234 ORTHO05D000335 6.8e-12 75.1 68 51.5
SalBow7G4270 Salvia bowleyana HOM05D000234 ORTHO05D000335 8.9e-12 74.7 76 47.4
FAN16G2944 Fragaria x ananassa HOM05D000234 ORTHO05D000335 1.2e-11 74.3 68 52.9
Lj2A999G36 Lonicera japonica HOM05D000234 ORTHO05D000335 1.2e-11 74.3 60 61.7
RcHm_v2.0_Chr5g0056071 Rosa chinensis HOM05D000234 ORTHO05D013040 1.5e-11 73.9 79 51.9
BcaC02g09335 Brassica carinata HOM05D000234 ORTHO05D000335 2.0e-11 73.6 110 40.9
C04p23730 Brassica napus HOM05D000234 ORTHO05D000335 2.0e-11 73.6 110 40.9
BolC4t25727H Brassica oleracea HOM05D000234 ORTHO05D013040 2.0e-11 73.6 110 40.9
Hma1.2p1_0981F.1_g243680 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 2.6e-11 73.2 137 35.8
RcHm_v2.0_Chr5g0056001 Rosa chinensis HOM05D000234 ORTHO05D000335 2.6e-11 73.2 66 53.0
BcaC02g10913 Brassica carinata HOM05D000234 ORTHO05D000335 3.4e-11 72.8 110 40.9
CANSAT64G0728 Cannabis sativa HOM05D000234 ORTHO05D000335 3.4e-11 72.8 69 55.1
QL01p014282 Quercus lobata HOM05D000234 ORTHO05D044811 3.4e-11 72.8 170 38.2
BolC4t23872H Brassica oleracea HOM05D000234 ORTHO05D000335 4.4e-11 72.4 112 40.2
Ciclev10027750m.g Citrus clementina HOM05D000234 ORTHO05D000335 4.4e-11 72.4 71 45.1
FAN25G1574 Fragaria x ananassa HOM05D000234 ORTHO05D000335 4.4e-11 72.4 66 51.5
Lj2C1001G4 Lonicera japonica HOM05D000234 ORTHO05D000335 4.4e-11 72.4 81 51.9
MD03G1130600 Malus domestica HOM05D000234 ORTHO05D000335 4.4e-11 72.4 66 51.5
Eucgr.B03907 Eucalyptus grandis HOM05D000234 ORTHO05D000335 5.8e-11 72.0 60 55.0
Lalb_Chr19g0136821 Lupinus albus HOM05D000234 ORTHO05D000335 7.6e-11 71.6 188 38.8
Actinidia07198 Actinidia chinensis HOM05D000234 ORTHO05D000335 9.9e-11 71.2 124 37.1
BraA07t29559Z Brassica rapa HOM05D000234 ORTHO05D000335 9.9e-11 71.2 112 41.1
CANSAT64G0628 Cannabis sativa HOM05D000234 ORTHO05D000335 9.9e-11 71.2 68 54.4
CsaV3_1G014330 Cucumis sativus L. HOM05D000234 ORTHO05D000335 9.9e-11 71.2 87 44.8
CSS0022825 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.3e-10 70.9 72 48.6
Duzib168G1838 Durio zibethinus HOM05D000234 ORTHO05D000335 1.3e-10 70.9 120 42.5
Eucgr.B03909 Eucalyptus grandis HOM05D000234 ORTHO05D000335 1.3e-10 70.9 65 50.8
A07p18430 Brassica napus HOM05D000234 ORTHO05D000335 1.7e-10 70.5 112 41.1
Lj1C217T2 Lonicera japonica HOM05D000234 ORTHO05D000335 1.7e-10 70.5 90 38.9
Ca_19326_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 2.2e-10 70.1 63 52.4
Gorai.006G103000 Gossypium raimondii HOM05D000234 ORTHO05D000335 2.2e-10 70.1 74 47.3
Medtr4g056430 Medicago truncatula HOM05D000234 ORTHO05D000335 2.2e-10 70.1 178 34.8
THA.LOC104800561 Tarenaya hassleriana HOM05D000234 ORTHO05D000335 2.2e-10 70.1 75 42.7
Peaxi162Scf00114g00035 Petunia axillaris HOM05D000234 ORTHO05D000335 2.9e-10 69.7 76 52.6
Aqoxy2G01552 Aquilegia oxysepala HOM05D000234 ORTHO05D000335 3.8e-10 69.3 75 48.0
Psat7g026520 Pisum sativum HOM05D000234 ORTHO05D000335 3.8e-10 69.3 78 48.7
CsaV3_4G022010 Cucumis sativus L. HOM05D000234 ORTHO05D000335 4.9e-10 68.9 87 43.7
RcHm_v2.0_Chr5g0056081 Rosa chinensis HOM05D000234 ORTHO05D000335 4.9e-10 68.9 35 80.0
Nitab4.5_0004517g0010 Nicotiana tabacum HOM05D000234 ORTHO05D000335 6.4e-10 68.6 113 38.9
arahy.Tifrunner.gnm1.ann1.S52WLR Arachis hypogaea HOM05D000234 ORTHO05D000335 8.4e-10 68.2 123 40.7
ClCG01G014010 Citrullus lanatus HOM05D000234 ORTHO05D000335 8.4e-10 68.2 59 54.2
Dinv29398 Davidia involucrata HOM05D000234 ORTHO05D000335 8.4e-10 68.2 161 35.4
Potri.009G001500 Populus trichocarpa HOM05D000234 ORTHO05D000335 8.4e-10 68.2 106 42.5
Atru.chr8.1479 Acer truncatum HOM05D000234 ORTHO05D000335 1.1e-09 67.8 101 39.6
Actinidia24164 Actinidia chinensis HOM05D000234 ORTHO05D000335 1.1e-09 67.8 103 38.8
Ciclev10027752m.g Citrus clementina HOM05D000234 ORTHO05D000335 1.1e-09 67.8 71 43.7
Ah.01g016150 Amaranthus hybridus HOM05D005484 ORTHO05D006761 1.9e-09 67.0 83 45.8
Gohir.A09G086900 Gossypium hirsutum HOM05D000234 ORTHO05D000335 1.9e-09 67.0 72 47.2
Gohir.D09G086500 Gossypium hirsutum HOM05D000234 ORTHO05D000335 1.9e-09 67.0 74 45.9
BcaB02g10122 Brassica carinata HOM05D000234 ORTHO05D000335 2.4e-09 66.6 121 39.7
Thhalv10016181m.g Eutrema salsugineum HOM05D000234 ORTHO05D000335 2.4e-09 66.6 117 38.5
RcHm_v2.0_Chr5g0056091 Rosa chinensis HOM05D000234 ORTHO05D000335 2.4e-09 66.6 64 50.0
CSS0036081 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 4.1e-09 65.9 32 84.4
PSO384G4486 Papaver somniferum HOM05D000234 ORTHO05D000335 4.1e-09 65.9 77 44.2
Ciclev10027755m.g Citrus clementina HOM05D000234 ORTHO05D000335 5.4e-09 65.5 65 47.7
Ciclev10027760m.g Citrus clementina HOM05D000234 ORTHO05D000335 5.4e-09 65.5 65 47.7
FvH4_3g30201 Fragaria vesca HOM05D000234 ORTHO05D000335 7.1e-09 65.1 62 51.6
Glyma.12G083500 Glycine max HOM05D000234 ORTHO05D000335 7.1e-09 65.1 127 37.8
Thecc.09G294900 Theobroma cacao HOM05D000234 ORTHO05D000335 7.1e-09 65.1 122 36.1
Nn6g35123 Nelumbo nucifera HOM05D000234 ORTHO05D000335 9.2e-09 64.7 89 37.1
Sc12g0003830 Simmondsia chinensis HOM05D000234 ORTHO05D000335 9.2e-09 64.7 65 46.2
TAR636G1923 Trochodendron aralioides HOM05D000234 ORTHO05D000335 9.2e-09 64.7 113 36.3
Ciclev10027763m.g Citrus clementina HOM05D000234 ORTHO05D000335 1.2e-08 64.3 65 46.2
Potri.006G118600 Populus trichocarpa HOM05D000234 ORTHO05D000335 1.2e-08 64.3 41 61.0
Sed0001076 Sechium edule HOM05D000234 ORTHO05D000335 1.6e-08 63.9 46 56.5
AT2G27880 Arabidopsis thaliana HOM05D000234 ORTHO05D000335 2.1e-08 63.5 42 61.9
FAN21G0058 Fragaria x ananassa HOM05D000234 ORTHO05D000335 2.1e-08 63.5 61 50.8
COL.COLO4_19252 Corchorus olitorius HOM05D000234 ORTHO05D000335 2.7e-08 63.2 142 37.3
Migut.D02317 Erythranthe guttata HOM05D000234 ORTHO05D000335 2.7e-08 63.2 99 37.4
Nn2g13920 Nelumbo nucifera HOM05D000234 ORTHO05D000335 2.7e-08 63.2 184 32.6
PGR102G3042 Punica granatum HOM05D000234 ORTHO05D000335 2.7e-08 63.2 63 49.2
SGA_v2.0_scaffold27G11585 Striga asiatica HOM05D000234 ORTHO05D000335 2.7e-08 63.2 71 47.9
Cc01_g10060 Coffea canephora HOM05D000234 ORTHO05D000335 3.5e-08 62.8 83 43.4
Lj3g0004248 Lotus japonicus HOM05D000234 ORTHO05D000335 3.5e-08 62.8 177 35.0
Nitab4.5_0003470g0100 Nicotiana tabacum HOM05D000234 ORTHO05D000335 3.5e-08 62.8 113 36.3
PGSC0003DMG400007129 Solanum tuberosum HOM05D000234 ORTHO05D000335 3.5e-08 62.8 39 66.7
PSO339G6171 Papaver somniferum HOM05D000234 ORTHO05D000335 4.6e-08 62.4 90 37.8
SHI06166 Sapria himalayana HOM05D000234 ORTHO05D000335 4.6e-08 62.4 71 45.1
Hund00813 Selenicereus undatus HOM05D000234 ORTHO05D000335 4.6e-08 62.4 73 43.8
FAN16G0198 Fragaria x ananassa HOM05D000234 ORTHO05D000335 6.0e-08 62.0 66 47.0
PSO339G5633 Papaver somniferum HOM05D000234 ORTHO05D000335 6.0e-08 62.0 75 38.7
AUR62023976 Chenopodium quinoa HOM05D000234 ORTHO05D000335 7.8e-08 61.6 37 64.9
Carub.0004s0863 Capsella rubella HOM05D000234 ORTHO05D000335 1.0e-07 61.2 70 50.0
CARHR120570 Cardamine hirsuta HOM05D000234 ORTHO05D000335 1.0e-07 61.2 71 38.0
Sopen06g031140 Solanum pennellii HOM05D000234 ORTHO05D000335 1.0e-07 61.2 69 44.9
Thecc.01G094000 Theobroma cacao HOM05D000234 ORTHO05D000335 1.0e-07 61.2 118 34.7
AL4G22360 Arabidopsis lyrata HOM05D000234 ORTHO05D000335 1.3e-07 60.8 94 36.2
Manes.11G154900 Manihot esculenta HOM05D000234 ORTHO05D000335 1.3e-07 60.8 65 47.7
AUR62023977 Chenopodium quinoa HOM05D000234 ORTHO05D000335 1.7e-07 60.5 98 35.7
SalBow6G5706 Salvia bowleyana HOM05D000234 ORTHO05D000335 1.7e-07 60.5 52 42.3
TAR636G2444 Trochodendron aralioides HOM05D000234 ORTHO05D000335 1.7e-07 60.5 82 37.8
MD11G1152200 Malus domestica HOM05D000234 ORTHO05D000335 2.3e-07 60.1 177 32.8
QL01p014230 Quercus lobata HOM05D000234 ORTHO05D000335 2.3e-07 60.1 196 34.2
Aqoxy5G02218 Aquilegia oxysepala HOM05D000234 ORTHO05D000335 3.0e-07 59.7 42 54.8
EL10Ac9g21040 Beta vulgaris HOM05D000234 ORTHO05D000335 3.0e-07 59.7 39 61.5
TWI75G1151 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 3.0e-07 59.7 192 34.9
GSVIVG01031430001 Vitis vinifera HOM05D000234 ORTHO05D000335 3.0e-07 59.7 54 44.4
TPR.G35039 Trifolium pratense HOM05D000234 ORTHO05D000335 3.9e-07 59.3 178 36.5
DCAR_018752 Daucus carota HOM05D000234 ORTHO05D000335 5.1e-07 58.9 32 78.1
Zm00001eb053110 Zea mays HOM05D000234 ORTHO05D000335 5.1e-07 58.9 70 38.6
CSS0030178 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D013040 6.6e-07 58.5 84 39.3
CDE06G1013 Ceratophyllum demersum HOM05D000234 ORTHO05D000335 8.7e-07 58.2 88 34.1
Medtr4g056470 Medicago truncatula HOM05D000234 ORTHO05D000335 8.7e-07 58.2 67 46.3
Zm00001eb217290 Zea mays HOM05D000234 ORTHO05D000335 8.7e-07 58.2 134 33.6
Oeu026990.1 Olea europaea HOM05D000234 ORTHO05D000335 1.5e-06 57.4 41 53.7
vmacro03236 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 1.5e-06 57.4 32 68.8
Os03g0800200 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 1.9e-06 57.0 76 38.2
Thecc.01G094200 Theobroma cacao HOM05D000234 ORTHO05D000335 1.9e-06 57.0 154 33.1
VMungo1127G1983 Vigna mungo HOM05D000234 ORTHO05D000335 1.9e-06 57.0 79 39.2
Cpa.g.sc75.90 Carica papaya HOM05D000234 ORTHO05D000335 2.5e-06 56.6 54 46.3
Solyc06g074730.4 Solanum lycopersicum HOM05D000234 ORTHO05D000335 2.5e-06 56.6 39 59.0
Rhsim13G0103100 Rhododendron simsii HOM05D000234 ORTHO05D000335 4.3e-06 55.8 110 36.4
ATR0083G035 Amborella trichopoda HOM05D000234 ORTHO05D000335 5.6e-06 55.5 37 59.5
FvH4_5g18150 Fragaria vesca HOM05D000234 ORTHO05D000335 5.6e-06 55.5 48 50.0
FAN13G1539 Fragaria x ananassa HOM05D000234 ORTHO05D000335 5.6e-06 55.5 48 50.0
FAN18G2843 Fragaria x ananassa HOM05D000234 ORTHO05D000335 5.6e-06 55.5 48 50.0
Nn8g39327 Nelumbo nucifera HOM05D000234 ORTHO05D000335 5.6e-06 55.5 61 42.6
Peaxi162Scf00316g00027 Petunia axillaris HOM05D000234 ORTHO05D000335 5.6e-06 55.5 37 59.5
Cpa.g.sc47.31 Carica papaya HOM05D000234 ORTHO05D000335 7.3e-06 55.1 101 37.6
DCAR_024186 Daucus carota HOM05D000234 ORTHO05D029206 7.3e-06 55.1 73 41.1
Eucgr.H00615 Eucalyptus grandis HOM05D000234 ORTHO05D000335 7.3e-06 55.1 81 38.3
MBI06_g17685_MAGBIO Magnolia biondii HOM05D000234 ORTHO05D000335 7.3e-06 55.1 116 39.7
CDE07G1578 Ceratophyllum demersum HOM05D000234 ORTHO05D000335 9.6e-06 54.7 84 38.1
MELO3C004836.2 Cucumis melo HOM05D000234 ORTHO05D000335 9.6e-06 54.7 183 31.1
Migut.D01445 Erythranthe guttata HOM05D000234 ORTHO05D000335 9.6e-06 54.7 38 57.9
FAN04G1970 Fragaria x ananassa HOM05D000234 ORTHO05D000335 9.6e-06 54.7 48 50.0
Lalb_Chr03g0037491 Lupinus albus HOM05D000234 ORTHO05D000335 9.6e-06 54.7 37 56.8
Os06g0597400 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 9.6e-06 54.7 37 59.5
Sabra09G0100400 Salix brachista HOM05D000234 ORTHO05D000335 9.6e-06 54.7 37 56.8
Sabra10G0061800 Salix brachista HOM05D000234 ORTHO05D000335 9.6e-06 54.7 37 56.8
TWI73G1268 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 9.6e-06 54.7 37 56.8
Zm00001eb276980 Zea mays HOM05D000234 ORTHO05D000335 9.6e-06 54.7 37 59.5


User provided reference genes

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