Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 0.0e+00 1762.3 871 100.0
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1250.3 873 74.1
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 0.0e+00 1152.1 645 91.2
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1102.4 870 65.2
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1097.8 874 66.4
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1095.9 871 66.5
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1095.5 872 65.1
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1093.6 872 65.9
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1092.8 871 65.4
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1090.1 871 66.0
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1087.4 876 65.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1086.6 871 65.6
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1083.9 876 64.8
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1082.8 871 65.0
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1081.6 872 64.8
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1080.5 870 65.4
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1079.3 876 64.7
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1078.2 870 65.2
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 6.0e-312 1073.5 872 63.6
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 4.2e-311 1071.2 873 64.7
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.5e-310 1069.3 872 64.2
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.7e-310 1067.0 870 64.9
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 2.2e-309 1065.4 876 63.8
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.9e-308 1062.4 880 63.1
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 1.8e-306 1055.8 878 62.4
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 3.0e-306 1055.0 872 63.2
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 2.0e-305 1052.4 869 63.3
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 2.7e-299 1031.9 873 61.1
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.6e-289 998.8 853 61.8
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.8e-289 996.9 871 62.2
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 2.2e-288 995.7 877 60.3
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 4.8e-288 994.6 876 59.1
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.1e-287 993.4 853 61.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 4.5e-286 988.0 861 60.5
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.9e-285 985.3 851 62.3
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 5.0e-285 984.6 874 59.3
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 6.6e-285 984.2 853 61.0
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 3.3e-284 981.9 870 60.1
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 2.8e-283 978.8 876 59.7
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 2.8e-283 978.8 854 60.5
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 4.7e-283 978.0 881 60.5
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 9.8e-281 970.3 851 61.1
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 2.2e-280 969.1 882 58.8
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 3.7e-280 968.4 848 60.3
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.8e-279 966.1 856 60.6
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.0e-278 962.6 875 57.8
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 2.7e-278 962.2 879 59.0
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 5.9e-278 961.1 883 58.4
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 7.8e-278 960.7 853 60.7
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 3.3e-276 955.3 879 56.5
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.1e-275 952.6 688 69.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 2.8e-275 952.2 885 56.2
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 4.7e-275 951.4 884 57.7
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 6.1e-275 951.0 877 57.8
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 2.6e-273 945.7 872 57.1
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 9.8e-273 943.7 892 57.1
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 3.7e-272 941.8 850 58.4
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 1.1e-271 940.3 868 57.5
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.2e-270 936.8 874 57.9
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 5.6e-268 927.9 852 57.9
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 5.6e-268 927.9 849 58.1
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.6e-267 926.4 877 56.9
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.2e-267 924.5 846 59.3
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.4e-266 923.3 877 56.6
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 7.5e-265 917.5 879 56.4
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 1.3e-264 916.8 877 56.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.7e-264 916.4 880 55.8
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.7e-264 916.4 875 56.6
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 2.2e-264 916.0 887 56.0
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 4.9e-264 914.8 877 56.4
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.4e-263 912.5 800 61.6
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.1e-263 911.8 818 57.7
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.6e-262 909.8 880 55.2
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 3.0e-261 905.6 875 55.8
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 3.9e-261 905.2 879 55.2
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 6.6e-261 904.4 903 54.9
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.5e-260 903.3 649 71.0
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.5e-260 903.3 649 71.0
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 2.5e-260 902.5 850 55.9
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 9.5e-260 900.6 887 54.6
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 4.7e-259 898.3 876 55.6
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.2e-254 883.6 883 54.8
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.1e-253 878.2 650 69.5
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 9.3e-247 857.4 882 54.3
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 3.6e-243 845.5 876 53.8
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.4e-242 843.6 873 53.2
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.1e-242 842.4 917 52.9
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.2e-240 836.3 620 67.7
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.4e-239 832.8 770 56.6
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.7e-237 826.6 647 66.9
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 3.6e-235 818.9 889 51.2
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 4.5e-233 812.0 936 48.5
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 3.0e-221 772.7 653 62.6
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 8.2e-219 764.6 839 52.2
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 3.5e-193 679.5 694 51.3
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 9.8e-180 634.8 577 59.6
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 9.1e-178 628.2 870 41.8
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 1.7e-176 624.0 835 43.7
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 3.0e-173 613.2 857 43.1
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 5.4e-170 602.4 701 47.1
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 9.5e-167 591.7 480 59.4
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.7e-160 570.9 511 58.9
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.3e-152 544.7 579 49.4
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 7.5e-148 528.9 425 65.6
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 7.1e-146 522.3 436 64.4
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 7.1e-130 469.2 363 65.8
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.3e-127 460.3 424 57.5
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 9.0e-109 399.1 693 36.2
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.8e-108 396.4 374 57.8
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.5e-106 391.0 371 56.6
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.2e-105 388.7 648 37.3
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 2.3e-104 384.4 687 36.5
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 1.4e-98 365.2 510 44.5
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 3.3e-95 354.0 306 61.1
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.5e-91 339.7 490 39.2
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.2e-76 292.4 378 48.4
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.3e-75 288.9 182 73.1
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.3e-72 278.1 911 28.4
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.1e-65 255.0 307 46.3
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.0e-64 252.7 316 48.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 5.2e-64 250.4 266 50.8
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.7e-57 227.3 144 72.2
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.6e-52 212.2 353 39.9
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 2.0e-52 211.8 206 54.9
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 7.7e-52 209.9 255 51.8
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.1e-45 187.6 261 41.8
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.6e-44 185.7 221 49.3
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.6e-44 184.1 168 60.1
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.9e-42 178.7 168 58.3
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.5e-34 151.8 280 35.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.1e-26 126.3 107 57.9
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.2e-24 117.5 244 34.4
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.4e-21 108.6 109 50.5
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 5.1e-19 100.9 118 49.2
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-18 99.0 122 39.3
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.5e-10 72.8 71 54.9
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.5e-10 72.8 155 31.0
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.6e-10 70.9 43 74.4
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 8.1e-09 67.0 91 42.9
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 3.1e-08 65.1 284 25.4


User provided reference genes

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