Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 0.0e+00 1119.4 574 100.0
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 2.4e-275 951.8 574 83.4
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 2.2e-273 945.3 646 77.2
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 4.6e-271 937.6 616 78.7
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 1.0e-270 936.4 615 78.4
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 7.4e-269 930.2 615 77.4
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 7.4e-269 930.2 615 77.9
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 1.6e-268 929.1 616 78.2
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 1.1e-267 926.4 612 78.1
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.4e-267 926.0 615 77.2
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 1.4e-267 926.0 574 81.0
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 1.4e-267 926.0 615 77.2
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 4.1e-267 924.5 620 77.1
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 6.9e-267 923.7 615 77.1
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 9.0e-267 923.3 616 76.8
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 1.5e-266 922.5 615 76.4
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 4.5e-266 921.0 615 77.6
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 4.5e-266 921.0 615 77.2
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 5.0e-265 917.5 615 76.1
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 6.5e-265 917.1 613 77.0
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 5.5e-264 914.1 615 75.4
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 5.5e-264 914.1 615 75.6
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 7.2e-264 913.7 615 76.4
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 9.4e-264 913.3 652 73.8
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.1e-263 912.1 603 77.4
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.6e-263 911.0 603 77.4
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 6.1e-263 910.6 615 76.1
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 6.1e-263 910.6 615 75.3
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 1.8e-262 909.1 616 75.6
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 8.8e-262 906.7 616 75.5
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.1e-261 906.4 615 75.8
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.5e-261 906.0 615 75.8
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 1.5e-261 906.0 615 75.4
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 2.5e-261 905.2 608 76.2
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.3e-261 904.8 603 77.1
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.3e-261 904.8 603 77.1
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 5.7e-261 904.0 613 76.0
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 7.4e-261 903.7 574 79.3
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 3.4e-258 894.8 615 77.6
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 5.9e-258 894.0 600 76.3
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 1.3e-257 892.9 615 74.8
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 3.8e-257 891.3 616 74.8
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 5.0e-257 891.0 617 73.9
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 1.4e-256 889.4 615 73.5
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.9e-256 889.0 611 75.8
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 7.2e-256 887.1 602 76.1
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.2e-255 886.3 657 70.0
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 6.1e-255 884.0 615 74.0
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 2.8e-252 875.2 605 73.9
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 7.0e-251 870.5 604 74.8
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 1.2e-250 869.8 615 72.0
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 1.6e-250 869.4 574 77.7
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 5.0e-249 864.4 574 74.4
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 2.5e-248 862.1 612 71.4
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 3.2e-248 861.7 602 74.6
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 1.2e-247 859.8 612 71.1
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.6e-247 859.4 633 70.3
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 6.1e-247 857.4 612 71.6
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 1.0e-246 856.7 613 71.9
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 2.6e-245 852.0 574 75.3
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 3.7e-244 848.2 613 70.5
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 8.2e-244 847.0 613 70.5
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 3.1e-243 845.1 619 71.4
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.3e-241 839.7 605 72.4
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 1.7e-241 839.3 604 72.5
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.9e-241 838.6 615 71.4
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 3.8e-241 838.2 615 68.8
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.6e-239 831.6 602 73.3
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 8.0e-239 830.5 638 66.8
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 3.0e-238 828.6 616 70.9
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 1.1e-235 820.1 586 72.9
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 2.7e-234 815.5 615 68.1
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 5.9e-234 814.3 530 78.7
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 1.3e-233 813.1 615 67.8
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 5.5e-232 807.7 615 68.1
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 1.6e-231 806.2 581 71.6
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 8.0e-231 803.9 605 68.3
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 8.0e-231 803.9 605 68.3
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.8e-230 802.7 605 67.9
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 2.3e-230 802.4 615 67.5
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 4.0e-230 801.6 582 73.0
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 4.0e-230 801.6 615 67.2
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 8.8e-230 800.4 615 67.2
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 1.2e-229 800.0 615 67.2
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 3.7e-228 795.0 557 74.3
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 4.9e-228 794.7 615 67.6
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 3.1e-227 792.0 618 66.5
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 4.1e-227 791.6 625 65.8
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.7e-226 788.9 613 69.0
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.7e-226 788.9 613 67.2
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 3.8e-225 785.0 554 73.1
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 1.5e-224 783.1 612 66.7
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 4.3e-224 781.6 616 66.1
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 4.7e-223 778.1 625 64.3
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 2.2e-220 769.2 644 65.1
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 7.0e-219 764.2 518 76.6
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.8e-215 752.3 608 64.3
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 1.2e-213 746.9 597 65.7
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 1.2e-213 746.9 611 62.2
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 1.2e-213 746.9 611 62.7
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.5e-205 719.9 395 94.4
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 4.4e-205 718.4 597 66.8
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 4.3e-200 701.8 520 69.2
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 4.7e-191 671.8 622 58.7
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.4e-187 659.4 580 60.9
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 3.9e-185 652.1 613 58.9
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 8.4e-180 634.4 624 53.7
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 5.3e-174 615.1 395 77.5
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 6.7e-169 598.2 623 52.0
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 1.3e-161 573.9 611 50.9
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 5.1e-161 572.0 610 50.3
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 9.6e-160 567.8 400 73.8
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 9.1e-150 534.6 327 82.9
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 1.8e-142 510.4 533 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 4.1e-126 456.1 387 58.9
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 5.7e-120 435.6 324 70.4
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.3e-119 432.2 329 68.4
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 7.0e-118 428.7 290 72.8
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 3.4e-112 409.8 469 52.0
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 7.5e-112 408.7 325 64.3
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.3e-108 397.9 339 64.0
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.0e-108 396.0 308 67.2
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 2.9e-103 380.2 241 77.2
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 2.6e-96 357.1 651 35.2
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 4.9e-95 352.8 241 69.3
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 5.0e-92 342.8 286 62.6
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 2.5e-83 313.9 193 78.8
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 1.4e-78 298.1 252 65.9
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 1.6e-77 294.7 255 60.8
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 3.9e-76 290.0 731 30.1
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 4.0e-73 280.0 182 76.9
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.5e-72 278.1 211 65.4
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.1e-67 261.9 161 80.7
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.3e-67 260.4 251 57.8
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 4.8e-66 256.5 178 71.9
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.2e-62 243.4 259 52.9
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 2.1e-61 241.1 274 54.0
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 1.8e-57 228.0 748 26.1
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-55 221.5 248 46.0
QL08p054473 Quercus lobata HOM05D004229 ORTHO05D005468 6.4e-55 219.5 143 79.0
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 1.4e-54 218.4 151 78.8
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 1.4e-46 191.8 189 55.0
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.2e-46 190.7 124 75.8
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 1.6e-45 188.3 120 76.7
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 1.3e-44 185.3 125 72.0
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.8e-41 174.9 205 47.8
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 9.3e-38 162.5 147 60.5
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 2.8e-34 151.0 174 51.7
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 4.8e-34 150.2 497 26.8
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.0e-32 144.8 159 49.7
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 3.9e-28 130.6 73 83.6
Carub.0005s2207 Capsella rubella HOM05D004229 ORTHO05D005468 1.2e-21 109.0 84 67.9
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 2.1e-21 108.2 72 73.6
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.7e-21 107.8 77 72.7
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 3.3e-19 100.9 62 77.4
Sopen01g012580 Solanum pennellii HOM05D004229 ORTHO05D026150 1.8e-17 95.1 100 55.0
MELO3C028235.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.1e-17 94.0 51 86.3
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 4.5e-16 90.5 234 32.1
Solyc05g024120.3 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.0e-15 89.4 117 47.9
Sopen01g007880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-15 87.8 52 82.7
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.1e-14 85.9 52 80.8
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.2e-14 84.3 51 78.4
Sopen05g018790 Solanum pennellii HOM05D004229 ORTHO05D005468 2.0e-11 75.1 117 43.6
Solyc01g016900.1 Solanum lycopersicum HOM05D004229 ORTHO05D026150 3.3e-11 74.3 69 58.0
Sopen05g018750 Solanum pennellii HOM05D000004 ORTHO05D000002 2.2e-10 71.6 72 59.7
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 3.7e-10 70.9 54 64.8
AagrBONN_evm.TU.Sc2ySwM_344.5277 Anthoceros agrestis HOM05D004566 ORTHO05D006041 3.5e-08 64.3 449 22.0
Sopen05g016270 Solanum pennellii HOM05D004229 ORTHO05D026150 1.0e-07 62.8 43 74.4
Migut.N03233 Erythranthe guttata HOM05D004566 ORTHO05D006041 1.7e-07 62.0 450 20.0
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.7e-07 62.0 44 63.6
SGA_v2.0_scaffold19G08652 Striga asiatica HOM05D004566 ORTHO05D006041 2.2e-07 61.6 423 20.6
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 8.5e-07 59.7 41 61.0
Os02g0437800 Oryza sativa ssp. japonica HOM05D004566 ORTHO05D006041 1.9e-06 58.5 417 20.4
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 1.9e-06 58.5 46 60.9
Hma1.2p1_0107F.1_g051470 Hydrangea macrophylla HOM05D004566 ORTHO05D006041 3.2e-06 57.8 349 22.3
Zm00001eb172280 Zea mays HOM05D004566 ORTHO05D006041 3.2e-06 57.8 589 20.4
MSTRG.24197 Avicennia marina HOM05D004566 ORTHO05D006041 4.2e-06 57.4 426 20.4
MELO3C035290.2 Cucumis melo HOM05D004229 ORTHO05D025211 5.5e-06 57.0 70 48.6
Thhalv10018344m.g Eutrema salsugineum HOM05D004566 ORTHO05D006041 5.5e-06 57.0 586 19.5
Sc02g0000500 Simmondsia chinensis HOM05D004566 ORTHO05D006041 5.5e-06 57.0 581 20.0
EL10Ac5g10990 Beta vulgaris HOM05D004566 ORTHO05D006041 7.2e-06 56.6 422 20.4
VMungo1309G3090 Vigna mungo HOM05D004566 ORTHO05D006041 9.4e-06 56.2 425 20.0


User provided reference genes

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