Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 0.0e+00 1798.9 923 100.0
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 0.0e+00 1483.0 1125 73.0
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 0.0e+00 1097.8 934 64.8
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 0.0e+00 1094.0 901 66.8
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 0.0e+00 1090.9 901 66.6
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 1.2e-255 887.1 917 54.1
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 3.4e-255 885.6 924 53.8
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 5.7e-255 884.8 916 54.9
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.0e-251 874.0 935 54.1
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 2.3e-251 872.8 856 57.2
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 1.5e-250 870.2 930 54.0
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.0e-248 864.0 916 52.8
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 2.3e-248 862.8 927 53.1
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.5e-247 860.1 894 55.4
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 2.6e-247 859.4 887 54.8
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 5.7e-247 858.2 880 55.6
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.7e-246 855.5 924 52.6
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 4.1e-245 852.0 916 53.3
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 3.9e-243 845.5 909 52.7
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.9e-237 826.6 900 52.1
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 2.0e-236 823.2 920 52.3
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.7e-235 820.1 892 53.8
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.7e-235 820.1 804 56.2
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 3.6e-233 812.4 845 53.7
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.6e-233 812.4 920 51.8
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 3.6e-233 812.4 870 51.6
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 1.4e-232 810.4 875 52.9
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 8.9e-232 807.7 942 51.0
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.5e-231 807.0 920 51.4
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 2.0e-231 806.6 919 50.7
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.4e-229 800.4 933 49.9
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 8.6e-227 791.2 804 55.2
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 2.5e-226 789.6 922 49.7
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 5.6e-226 788.5 886 50.3
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 7.3e-226 788.1 896 48.7
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 3.1e-224 782.7 934 49.5
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 2.0e-223 780.0 854 51.8
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 3.8e-222 775.8 870 51.1
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 4.9e-222 775.4 902 50.4
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.4e-221 773.9 879 51.1
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 1.6e-220 770.4 791 54.1
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.6e-220 770.4 929 48.8
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 8.6e-219 764.6 870 50.7
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 1.1e-218 764.2 919 49.3
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 1.9e-218 763.5 895 47.6
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 5.2e-216 755.4 924 48.8
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 2.6e-215 753.1 842 50.7
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 4.9e-214 748.8 893 48.8
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 1.9e-213 746.9 849 49.7
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 3.2e-213 746.1 874 49.8
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 4.2e-213 745.7 915 48.1
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 4.6e-212 742.3 932 48.2
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 6.0e-212 741.9 838 50.1
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 1.0e-211 741.1 883 47.9
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 1.0e-211 741.1 916 47.6
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 3.9e-211 739.2 840 50.0
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 4.3e-210 735.7 942 46.5
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 4.8e-209 732.3 893 47.8
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 3.1e-208 729.6 923 46.7
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 4.0e-208 729.2 829 50.7
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 2.6e-207 726.5 883 47.6
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 1.7e-206 723.8 883 47.6
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.1e-205 721.1 850 48.7
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.7e-204 716.5 868 47.7
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 3.5e-204 716.1 829 49.5
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.8e-203 713.8 824 49.2
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 3.0e-203 713.0 855 48.7
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 5.1e-203 712.2 824 48.4
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 1.9e-202 710.3 819 48.7
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 8.1e-201 704.9 843 48.0
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 1.1e-200 704.5 847 47.7
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 3.1e-200 703.0 899 46.1
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 1.2e-199 701.0 915 46.3
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.0e-199 700.3 845 47.8
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 4.5e-199 699.1 832 48.3
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 7.4e-194 681.8 877 46.5
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 6.2e-193 678.7 845 46.9
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 8.2e-193 678.3 846 46.7
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.1e-192 677.9 775 50.8
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.4e-192 677.6 846 46.8
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 2.0e-191 673.7 825 46.5
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 3.4e-191 672.9 535 63.7
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 4.5e-191 672.5 869 45.2
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 1.0e-190 671.4 828 46.5
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 1.3e-190 671.0 828 46.6
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.6e-188 664.1 861 45.8
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.6e-188 664.1 826 46.1
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 6.0e-188 662.1 828 46.3
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 3.7e-185 652.9 824 45.6
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 2.7e-180 636.7 892 42.7
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 2.2e-174 617.1 841 44.0
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 8.8e-171 605.1 812 45.1
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 9.7e-170 601.7 940 40.5
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 4.4e-162 576.2 785 44.6
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.8e-161 572.8 845 43.0
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 8.5e-150 535.4 897 38.4
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.1e-149 535.0 809 40.8
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.0e-142 511.9 563 51.3
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 7.0e-128 462.6 673 42.9
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.3e-121 441.8 547 48.8
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.1e-112 412.1 900 34.4
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 3.9e-110 403.7 548 45.1
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 8.7e-94 349.4 449 46.5
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 2.1e-92 344.7 586 36.7
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 1.1e-91 342.4 533 39.8
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.4e-91 342.0 556 38.8
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 6.0e-87 326.6 259 65.3
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.5e-85 322.0 366 49.7
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 4.2e-72 277.3 570 33.9
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.2e-71 275.8 791 29.5
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.1e-61 242.7 836 28.1
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.7e-52 212.2 300 42.3
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 1.0e-46 193.0 535 29.9
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 4.7e-39 167.5 585 26.0
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 1.3e-36 159.5 208 45.7
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 1.7e-36 159.1 922 23.6
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 8.2e-36 156.8 812 25.4
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.6e-34 152.5 94 85.1
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 5.9e-34 150.6 152 55.3
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.9e-33 148.3 164 48.8
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 5.5e-32 144.1 162 50.0
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 4.4e-29 134.4 169 47.9
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 4.5e-26 124.4 145 47.6
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 1.7e-17 95.9 147 40.8
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 2.9e-17 95.1 92 54.3
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.5e-16 92.8 74 63.5
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 6.1e-15 87.4 585 21.7
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 3.4e-13 81.6 221 29.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-10 73.2 153 34.6
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 5.0e-09 67.8 72 44.4


User provided reference genes

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